Logo du site
  • English
  • Français
  • Se connecter
Logo du site
  • English
  • Français
  • Se connecter
  1. Accueil
  2. Université de Neuchâtel
  3. Publications
  4. A pangenome-guided manually curated library of transposable elements for Zymoseptoria tritici
 
  • Details
Options
Vignette d'image

A pangenome-guided manually curated library of transposable elements for Zymoseptoria tritici

Auteur(s)
Baril, Tobias
Croll, Daniel 
Institut de biologie 
Date de parution
2023-11-16T00:00:00Z
In
BMC research notes
Vol.
16
No
1
Mots-clés
  • Manual curation
  • TE consensus
  • TE library
  • Transposable Elements
  • Transposons
  • Zymoseptoria tritici
  • Manual curation

  • TE consensus

  • TE library

  • Transposable Elements...

  • Transposons

  • Zymoseptoria tritici

Résumé
High-quality species-specific transposable element (TE) libraries are required for studies to elucidate the evolutionary dynamics of TEs and gain an understanding of their impacts on host genomes. Such high-quality TE resources are severely lacking for species in the fungal kingdom. To facilitate future studies on the putative role of TEs in rapid adaptation observed in the fungal wheat pathogen Zymoseptoria tritici, we produced a manually curated TE library. This was generated by detecting TEs in 19 reference genome assemblies representing the global diversity of the species supplemented by multiple sister species genomes. Improvements over previous TE libraries have been made on TE boundary resolution, detection of ORFs, TE domains, terminal inverted repeats, and class-specific motifs.
A TE consensus library for Z. tritici formatted for use with RepeatMasker. This data is relevant to other researchers investigating TE-host evolutionary dynamics in Z. tritici or who are interested in comparative studies of the fungal kingdom. Further, this TE library can be used to improve gene annotation. Finally, this TE library increases the number of manually curated TE datasets, providing resources to further our understanding of TE diversity.
Identifiants
https://libra.unine.ch/handle/123456789/33362
_
10.1186/s13104-023-06613-7
_
37974222
Type de publication
journal article
Dossier(s) à télécharger
 main article: s13104-023-06613-7.pdf (832.91 KB)
google-scholar
Présentation du portailGuide d'utilisationStratégie Open AccessDirective Open Access La recherche à l'UniNE Open Access ORCIDNouveautés

Service information scientifique & bibliothèques
Rue Emile-Argand 11
2000 Neuchâtel
contact.libra@unine.ch

Propulsé par DSpace, DSpace-CRIS & 4Science | v2022.02.00