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Croll, Daniel

Nom
Croll, Daniel
Affiliation principale
Site web
Fonction
Professeur ordinaire
Email
daniel.croll@unine.ch
Identifiants
https://libra.unine.ch/handle/123456789/1099
_
0000-0002-2072-380X

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  • Publication
    Accès libre
    A pangenome-guided manually curated library of transposable elements for Zymoseptoria tritici
    (2023-11-16T00:00:00Z)
    Baril, Tobias
    ;
    Croll, Daniel 
    High-quality species-specific transposable element (TE) libraries are required for studies to elucidate the evolutionary dynamics of TEs and gain an understanding of their impacts on host genomes. Such high-quality TE resources are severely lacking for species in the fungal kingdom. To facilitate future studies on the putative role of TEs in rapid adaptation observed in the fungal wheat pathogen Zymoseptoria tritici, we produced a manually curated TE library. This was generated by detecting TEs in 19 reference genome assemblies representing the global diversity of the species supplemented by multiple sister species genomes. Improvements over previous TE libraries have been made on TE boundary resolution, detection of ORFs, TE domains, terminal inverted repeats, and class-specific motifs.