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Junier, Pilar
Nom
Junier, Pilar
Affiliation principale
Fonction
Professeure assistante
Email
pilar.junier@unine.ch
Identifiants
Résultat de la recherche
5 Résultats
Voici les éléments 1 - 5 sur 5
- PublicationMétadonnées seulementMLgsc: A Maximum-Likelihood General Sequence Classifier(2015)
; ; We present software package for classifying protein or nucleotide sequences to user-specified sets of reference sequences. The software trains a model using a multiple sequence alignment and a phylogenetic tree, both supplied by the user. The latter is used to guide model construction and as a decision tree to speed up the classification process. The software was evaluated on all the 16S rRNA gene sequences of the reference dataset found in the GreenGenes database. On this dataset, the software was shown to achieve an error rate of around 1% at genus level. Examples of applications based on the nitrogenase subunit NifH gene and a protein-coding gene found in endospore-forming Firmicutes is also presented. The programs in the package have a simple, straightforward command-line interface for the Unix shell, and are free and open-source. The package has minimal dependencies and thus can be easily integrated in command-line based classification pipelines. - PublicationMétadonnées seulementGenome Sequence of Kosakonia radicincitans Strain YD4, a Plant Growth-Promoting Rhizobacterium Isolated from Yerba Mate (Ilex paraguariensis St. Hill.)(2015)
; - PublicationMétadonnées seulement
- PublicationMétadonnées seulementComposition of diazotrophic bacterial assemblages in bean-planted soil compared to unplanted soil(2009)
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