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Fournier, Bertrand

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Fournier, Bertrand
Affiliation principale
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https://libra.unine.ch/handle/123456789/361

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  • Publication
    Accès libre
    Response of Sphagnum Peatland Testate Amoebae to a 1-Year Transplantation Experiment Along an Artificial Hydrological Gradient
    (2014-2-1)
    Marcisz, Katarzyna
    ;
    Fournier, Bertrand 
    ;
    Gilbert, Daniel
    ;
    Lamentowicz, Mariusz
    ;
    Mitchell, Edward 
    Peatland testate amoebae (TA) are well-established bioindicators for depth to water table (DWT), but effects of hydrological changes on TA communities have never been tested experimentally. We tested this in a field experiment by placing Sphagnum carpets (15 cm diameter) collected in hummock, lawn and pool microsites (origin) at three local conditions (dry, moist and wet) using trenches dug in a peatland. One series of samples was seeded with microorganism extract from all microsites. TA community were analysed at T0: 8–2008, T1: 5–2009 and T2: 8–2009. We analysed the data using conditional inference trees, principal response curves (PRC) and DWT inferred from TA communities using a transfer function used for paleoecological reconstruction. Density declined from T0 to T1 and then increased sharply by T2. Species richness, Simpson diversity and Simpson evenness were lower at T2 than at T0 and T1. Seeded communities had higher species richness in pool samples at T0. Pool samples tended to have higher density, lower species richness, Simpson diversity and Simpson Evenness than hummock and/or lawn samples until T1. In the PRC, the effect of origin was significant at T0 and T1, but the effect faded away by T2. Seeding effect was strongest at T1 and lowest vanished by T2. Local condition effect was strong but not in line with the wetness gradient at T1 but started to reflect it by T2. Likewise, TA-inferredDWTstarted to match the experimental conditions by T2, but more so in hummock and lawn samples than in pool samples. This study confirmed that TA responds to hydrological changes over a 1-year period. However, sensitivity of TA to hydrological fluctuations, and thus the accuracy of inferred DWT changes, was habitat specific, pool TA communities being least responsive to environmental changes. Lawns and hummocks may be thus better suited than pools for paleoecological reconstructions. This, however, contrasts with the higher prediction error and species’ tolerance for DWT with increasing dryness observed in transfer function models.
  • Publication
    Accès libre
    Dispersal limitations and historical factors determine the biogeography of specialized terrestrial protists
    Singer, David 
    ;
    Mitchell, Edward 
    ;
    Payne, Richard J
    ;
    Blandenier, Quentin 
    ;
    Duckert, Clément
    ;
    Fernández, Leonardo D
    ;
    Fournier, Bertrand 
    ;
    Hernández, Cristián E
    ;
    Granath, Gustaf
    ;
    Rydin, Håkan
    ;
    Bragazza, Luca
    ;
    Koronatova, Natalia G
    ;
    Goia, Irina
    ;
    Harris, Lorna I
    ;
    Kajukało, Katarzyna
    ;
    Kosakyan, Anush 
    ;
    Lamentowicz, Mariusz
    ;
    Kosykh, Natalia P
    ;
    Vellak, Kai
    ;
    Lara, Enrique 
    Recent studies show that soil eukaryotic diversity is immense and dominated by micro‐organisms. However, it is unclear to what extent the processes that shape the distribution of diversity in plants and animals also apply to micro‐organisms. Major diversification events in multicellular organisms have often been attributed to long‐term climatic and geological processes, but the impact of such processes on protist diversity has received much less attention as their distribution has often been believed to be largely cosmopolitan. Here, we quantified phylogeographical patterns in Hyalosphenia papilio, a large testate amoeba restricted to Holarctic Sphagnum‐dominated peatlands, to test if the current distribution of its genetic diversity can be explained by historical factors or by the current distribution of suitable habitats. Phylogenetic diversity was higher in Western North America, corresponding to the inferred geographical origin of the H. papilio complex, and was lower in Eurasia despite extensive suitable habitats. These results suggest that patterns of phylogenetic diversity and distribution can be explained by the history of Holarctic Sphagnum peatland range expansions and contractions in response to Quaternary glaciations that promoted cladogenetic range evolution, rather than the contemporary distribution of suitable habitats. Species distributions were positively correlated with climatic niche breadth, suggesting that climatic tolerance is key to dispersal ability in H. papilio. This implies that, at least for large and specialized terrestrial micro‐organisms, propagule dispersal is slow enough that historical processes may contribute to their diversification and phylogeographical patterns and may partly explain their very high overall diversity.
  • Publication
    Accès libre
    Soil protistology rebooted: 30 fundamental questions to start with
    Geisen, Stefan
    ;
    Mitchell, Edward 
    ;
    Wilkinson, David M
    ;
    Adl, Sina
    ;
    Bonkowski, Michael
    ;
    Brown, Matthew W
    ;
    Fiore-Donno, Anna Maria
    ;
    Heger, Thierry 
    ;
    Jassey, Vincent E.J
    ;
    Krashevska, Valentyna
    ;
    Lahr, Daniel J.G
    ;
    Marcisz, Katarzyna
    ;
    Mulot, Matthieu 
    ;
    Payne, Richard
    ;
    Singer, David 
    ;
    Anderson, Roger O
    ;
    Charman, Dan J
    ;
    Ekelund, Flemming
    ;
    Griffiths, Bryan S
    ;
    Rønn, Regin
    ;
    Smirnov, Alexey
    ;
    Bass, David
    ;
    Belbahri, Lassaâd 
    ;
    Berney, Cédric
    ;
    Blandenier, Quentin 
    ;
    Blandenier, Quentin
    ;
    Chatzinotas, Antonis
    ;
    Clarholm, Marianne
    ;
    Dunthorn, Micah
    ;
    Feest, Alan
    ;
    Fernández, Leonardo D
    ;
    Foissner, Wilhelm
    ;
    Fournier, Bertrand 
    ;
    Gentekaki, Eleni
    ;
    Hájek, Michal
    ;
    Helder, Johannes
    ;
    Jousset, Alexandre
    ;
    Koller, Robert
    ;
    Kumar, Santosh
    ;
    La Terza, Antonietta
    ;
    Lamentowicz, Mariusz
    ;
    Mazei, Yuri
    ;
    Santos, Susana S
    ;
    Seppey, Christophe V.W
    ;
    Spiegel, Frederick W
    ;
    Walochnik, Julia
    ;
    Winding, Anne
    ;
    Lara, Enrique 
    Protists are the most diverse eukaryotes. These microbes are keystone organisms of soil ecosystems and regulate essential processes of soil fertility such as nutrient cycling and plant growth. Despite this, protists have received little scientific attention, especially compared to bacteria, fungi and nematodes in soil studies. Recent methodological advances, particularly in molecular biology techniques, have made the study of soil protists more accessible, and have created a resurgence of interest in soil protistology. This ongoing revolution now enables comprehensive investigations of the structure and functioning of soil protist communities, paving the way to a new era in soil biology. Instead of providing an exhaustive review, we provide a synthesis of research gaps that should be prioritized in future studies of soil protistology to guide this rapidly developing research area. Based on a synthesis of expert opinion we propose 30 key questions covering a broad range of topics including evolution, phylogenetics, functional ecology, macroecology, paleoecology, and methodologies. These questions highlight a diversity of topics that will establish soil protistology as a hub discipline connecting different fundamental and applied fields such as ecology, biogeography, evolution, plant-microbe interactions, agronomy, and conservation biology. We are convinced that soil protistology has the potential to be one of the most exciting frontiers in biology.
  • Publication
    Accès libre
    Response of Sphagnum Peatland Testate Amoebae to a 1-Year Transplantation Experiment Along an Artificial Hydrological Gradient
    Marcisz, Katarzyna
    ;
    Fournier, Bertrand 
    ;
    Gilbert, Daniel
    ;
    Lamentowicz, Mariusz
    ;
    Mitchell, Edward 
    Peatland testate amoebae (TA) are well-established bioindicators for depth to water table (DWT), but effects of hydrological changes on TA communities have never been tested experimentally. We tested this in a field experiment by placing Sphagnum carpets (15 cm diameter) collected in hummock, lawn and pool microsites (origin) at three local conditions (dry, moist and wet) using trenches dug in a peatland. One series of samples was seeded with microorganism extract from all microsites. TA community were analysed at T0: 8–2008, T1: 5–2009 and T2: 8–2009. We analysed the data using conditional inference trees, principal response curves (PRC) and DWT inferred from TA communities using a transfer function used for paleoecological reconstruction. Density declined from T0 to T1 and then increased sharply by T2. Species richness, Simpson diversity and Simpson evenness were lower at T2 than at T0 and T1. Seeded communities had higher species richness in pool samples at T0. Pool samples tended to have higher density, lower species richness, Simpson diversity and Simpson Evenness than hummock and/or lawn samples until T1. In the PRC, the effect of origin was significant at T0 and T1, but the effect faded away by T2. Seeding effect was strongest at T1 and lowest vanished by T2. Local condition effect was strong but not in line with the wetness gradient at T1 but started to reflect it by T2. Likewise, TA-inferred DWT started to match the experimental conditions by T2, but more so in hummock and lawn samples than in pool samples. This study confirmed that TA responds to hydrological changes over a 1-year period. However, sensitivity of TA to hydrological fluctuations, and thus the accuracy of inferred DWT changes, was habitat specific, pool TA communities being least responsive to environmental changes. Lawns and hummocks may be thus better suited than pools for paleoecological reconstructions. This, however, contrasts with the higher prediction error and species’ tolerance for DWT with increasing dryness observed in transfer function models.