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The perils of taxonomic inconsistency in quantitative palaeoecology: experiments with testate amoeba data

2011, Payne, Richard J., Lamentowicz, Mariucz, Mitchell, Edward

A fundamental requirement of quantitative palaeoecology is consistent taxonomy between a modern training set and palaeoecological data. In this study we assess the possible consequences of violation of this requirement by simulating taxonomic errors in testate amoeba data. Combinations of easily confused taxa were selected, and data manipulated to reflect confusion of these taxa; transfer functions based on unmodified data were then applied to these modified data sets. Initially these experiments were carried out one error at a time using four modern training sets; subsequently, multiple errors were separately simulated both in four modern training sets and in four palaeoecological data sets. Some plausible taxonomic confusions caused major biases in reconstructed values. In the case of two palaeoecological data sets, a single consistent taxonomic error was capable of changing the pattern of environmental reconstruction beyond all recognition, totally removing any real palaeoenvironmental signal. The issue of taxonomic consistency is one that many researchers would rather ignore; our results show that the consequences of this may ultimately be severe.

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A near-annual palaeohydrological study based on testate amoebae from a sub-alpine mire: surface wetness and the role of climate during the instrumental period

2009, Lamentowicz, Mariucz, van Der Knaap, Willem, Lamentowicz, Lukasz, van Leeuwen, Jacqueline F. N., Mitchell, Edward, Tomasz, Goslar, Kamenik, Christian

We present the first testate amoeba-based palaeohydrological reconstruction from the Swiss Alps, and the first depth to the water table (DWT) calibration dataset for this region. Compared to existing models, our new calibration dataset performs well (RMSEP = 4.88), despite the length of the water table gradient covered (53 cm). The present-day topography and vegetation of the study mire Mauntschas suggest that it is partly ombrotrophic (large Sphagnum fuscum hummocks, one of which was the coring site) but mostly under the minerotrophic influence of springs in the mire and runoff from the surrounding area. Ombrotrophic Sphagnum fuscum hummocks developed at the sampling site only during the last 50 years, when testate amoebae indicate a shift towards dry and/or acid conditions. Prior to AD 1950 the water table was much higher, suggesting that the influence of the mineral-rich water prevented the development of ombrotrophic hummocks. The reconstructed DWT correlated with Pinus cembra pollen accumulation rates, suggesting that testate amoebae living on the mire and P. cembra growing outside of it partly respond to the same factor(s). Finally, temperature trends from the nearby meteorological station paralleled trends in reconstructed DWT. However, contrary to other studies made on raised bogs of northwestern Europe, the highest correlation was observed for winter temperature, despite the fact that testate amoebae would more logically respond to moisture conditions during the growing season. The observed correlation with winter temperature might reflect a control of winter severity on surface moisture during at least the first part of the growing season, through snow melt and soil frost phenomena influencing run-off. More ecohydrological work on sub-alpine mires is needed to understand the relationships between climate, testate amoebae and peatland development.

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Last millennium palaeoenvironmental changes from a Baltic bog (Poland) inferred from stable isotopes, pollen, plant macrofossils and testate amoebae

2008, Lamentowicz, Mariucz, Cedro, A., Gałka, M., Goslar, T., Miotk-Szpiganowicz, G., Mitchell, Edward, Pawlyta, J.

The Baltic coast of Northern Poland is an interesting region for palaeoclimatic studies because of the mixed oceanic and continental climatic influences and the fact that the dominance of one or the other of these two influences might have changed over time. Also, unlike many more intensively studied regions of Europe, human impact in the region was rather limited until the 19th century. We present a 1200-year high-resolution record from Stążki mire, an ombrotrophic bog located 35 km from the Baltic Sea coast. Using testate amoebae, stable isotopes (δ13C) of Sphagnum stems, pollen, plant macrofossils and dendroecological analyses, our aims were to: 1) reconstruct the last millennium palaeoenvironment in the study site and its surroundings, 2) identify the major wet–dry shifts, 3) determine if those events correlate with climate change and human impact, 4) assess the resilience of the Baltic bog ecosystem following human impact, and 5) compare the palaeo-moisture signal from the Baltic coast with records from more oceanic regions. Two dry periods are inferred at AD 1100–1500 and 1650–1900 (–2005). The first dry shift is probably climate-driven as pollen record shows little evidence of human indicators. The second dry shift can be related to local peat exploitation of the mire. In the 20th century additional limited drainage took place and since ca. AD 1950 the mire has been recovering. From 1500 AD onwards all proxies indicate wetter condition. The beginning of this wet shift occurred during the Little Ice Age and may therefore be a climatic signal. The macrofossil data show that Sphagnum fuscum dominated the pristine mire vegetation but then declined and finally disappeared at ca. AD 1900. This pattern is comparable with the timing of extinction of Sphagnum austinii (Sphagnum imbricatum) in the UK. This study illustrates the value of high-resolution multi-proxy studies of peat archives to assess the magnitude of anthropogenic land-use changes. This study presents the first direct comparison of testate amoebae and stable isotope data from the same core. The two proxies correlate significantly throughout the record and most strongly for the latter part of the record when most of the variability was recorded.

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The Ecology of Testate Amoebae (Protists) in Sphagnum in North-western Poland in Relation to Peatland Ecology

2005, Lamentowicz, Mariucz, Mitchell, Edward

We studied the relationship between testate amoebae (Protozoa) communities and the depth to the water table (DWT), pH, conductivity, and microhabitat type in Sphagnum dominated peatlands of north-western Poland and built predictive (transfer function) models for inferring DWT and pH based on the testate amoebae community structure. Such models can be used for peatland monitoring and paleoecology. A total of 52 testate amoebae taxa were recorded. In a redundancy analysis, DWT and pH explained 20.1% of the variation in the species data and allowed us to identify three groups of taxa: species that are associated with (1) high DWT and low pH, (2) low DWT and low pH, and (3) high pH and mid-range DWT. Our transfer function models allow DWT and pH to be estimated with mean errors of 9.89 cm and 0.71 pH units. The prediction error of the DWT model and the tolerance of the species both increase with increasing dryness. This pattern mirrors the ecology of Sphagnum mosses: Species growing in wet habitats are more sensitive to change in water table depth than the species growing in drier microhabitats. Our results are consistent with studies of testate amoeba ecology in other regions, and they provide additional support for the use of these organisms in paleoecological and biomonitoring contexts.

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Contrasting Species—Environment Relationships in Communities of Testate Amoebae, Bryophytes and Vascular Plants Along the Fen–Bog Gradient

2010, Lamentowicz, Mariucz, Lamentowicz, Lukasz, van der Knaap, W.O., GÄ…bka, Maciej, Mitchell, Edward

We studied the vegetation, testate amoebae and abiotic variables (depth of the water table, pH, electrical conductivity, Ca and Mg concentrations of water extracted from mosses) along the bog to extremely rich fen gradient in sub-alpine peatlands of the Upper Engadine (Swiss Alps). Testate amoeba diversity was correlated to that of mosses but not of vascular plants. Diversity peaked in rich fen for testate amoebae and in extremely rich fen for mosses, while for testate amoebae and mosses it was lowest in bog but for vascular plants in extremely rich fen. Multiple factor and redundancy analyses (RDA) revealed a stronger correlation of testate amoebae than of vegetation to water table and hydrochemical variables and relatively strong correlation between testate amoeba and moss community data. In RDA, hydrochemical variables explained a higher proportion of the testate amoeba and moss data than water table depth. Abiotic variables explained a higher percentage of the species data for testate amoebae (30.3% or 19.5% for binary data) than for mosses (13.4%) and vascular plants (10%). These results show that (1) vascular plant, moss and testate amoeba communities respond differently to ecological gradients in peatlands and (2) testate amoebae are more strongly related than vascular plants to the abiotic factors at the mire surface. These differences are related to vertical trophic gradients and associated niche differentiation.

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Potential implications of differential preservation of testate amoeba shells for paleoenvironmental reconstruction in peatlands

2008, Mitchell, Edward, Payne, Richard J., Lamentowicz, Mariucz

Testate amoebae are now commonly used in paleoenvironmental studies but little is known of their taphonomy. There is some experimental evidence for differential preservation of some testate amoeba shell types over others, but it is unclear what, if any impact this has on palaeoenvironmental reconstruction. To investigate this issue we looked at palaeoecological evidence for the preservation of different shell types. We then investigated the possible impact of selective preservation on quantitative palaeoenvironmental inference. We first used existing palaeoecological data sets to assess the vertical patterns of relative abundance in four testate amoeba shell types: (1) shells made of secreted biosilica plates (idiosomes, e.g. Euglypha), (2) idiosomes with thick organic coating (Assulina), (3) proteinaceous shells (e.g. Hyalosphenia), (4) shells built from recycled organic or mineral particles (xenosomes) (e.g. Difflugia, Centropyxis). In three diagrams a clear pattern of decay was only observed for the idiosome type. In order to assess the implications of differential preservation of testate amoeba taxa for paleoenvironmental reconstruction we then carried out simulations using three existing transfer functions and a wide range of scenarios, downweighting different test categories to represent the impact of selective test decomposition. Simulation results showed that downweighting generally reduced overall model performance. However downweighting a shell type only produced a consistent directional bias in inferred water table depth where that shell type is both dominant and shows a clear preference along the ecological gradient. Applying a scenario derived from previous experimental work did not lead to significant difference in inferred water table. Our results show that differential shell preservation has little impact on paleohydrological reconstruction from Sphagnum-dominated peatlands. By contrast, for the minerotrophic peatlands data-set loss of idiosome tests leads to consistent underestimation of water table depth. However there are few studies from fens and it is possible that idiosome tests are not always dominant, and/or that differential decomposition is less marked than in Sphagnum peatlands. Further work is clearly needed to assess the potential of testate amoebae for paleoecological studies of minerotrophic peatlands.

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Ribosomal RNA Genes Challenge the Monophyly of the Hyalospheniidae (Amoebozoa: Arcellinida)

2008, Lara, Enrique, Heger, Thierry J., Ekelund, Flemming, Lamentowicz, Mariucz, Mitchell, Edward

To date only five partial and two complete SSU rRNA gene sequences are available for the lobose testate amoebae (Arcellinida). Consequently, the phylogenetic relationships among taxa and the definition of species are still largely dependant on morphological characters of uncertain value, which causes confusion in the phylogeny, taxonomy and the debate on cosmopolitanism of free-living protists. Here we present a SSU rRNA-based phylogeny of the Hyalospheniidae including the most common species. Similar to the filose testate amoebae of the order Euglyphida the most basal clades have a terminal aperture; the ventral position of the pseudostome appears to be a derived character. Family Hyalospheniidae appears paraphyletic and is separated into three clades: (1) Heleopera sphagni, (2) Heleopera rosea and Argynnia dentistoma and (3) the rest of the species from genera Apodera, Hyalosphenia, Porosia and Nebela. Our data support the validity of morphological characters used to define species among the Hyalospheniidae and even suggest that taxa described as varieties may deserve the rank of species (e.g. N. penardiana var. minor). Finally our results suggest that the genera Hyalosphenia and Nebela are paraphyletic, and that Porosia bigibbosa branches inside the main Nebela clade.

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A multi-proxy high-resolution approach to reconstructing past environmental change from an Alpine peat archive

2010, Lamentowicz, Mariucz, van der Knaap, W.O., van Leeuwen, Jacqueline F. N., Hangartner, S., Mitchell, Edward, Goslar, T., Tinner, W., Kamenik, Christian

High-resolution multiproxy studies on alpine peatlands reveal how environmental changes (including human impact) have influenced the developmental history of these unusual ecosystems. Here we summarize results of new paleoclimate reconstructions based on calibration and validation with the instrumental climate record.

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Autogenic succession, land-use change, and climatic influences on the Holocene development of a kettle-hole mire in Northern Poland

2008, Lamentowicz, Mariucz, Milena Obremska, Mitchell, Edward

We reconstructed the Holocene developmental history of a kettle-hole peatland in the Tuchola Forest of Northern Poland, using pollen, testat amoebae and plant macrofossil indicators. Our aims were to determine the timing and pattern of autogenic succession and natural and anthropogenic influences on the peatland. Northern Poland is under mixed oceanic and continental climatic influences but has so far been less studied in a palaeoecological context than more oceanic regions of Europe. In the first terrestrial developmental phase of the mire, the testate amoebae-inferred depth to water table revealed two major dry shifts at ca. 9400 (end of lake phase) and ca. 7100 cal BP (a period of global cooling and dry shift in Western Europe). Conditions became wetter again in two steps at ca. 6700 and ca. 5800 BP after a dry event at ca. 6100 BP. The timing of the wet shift at 5800 BP corresponds to wet periods in Western Europe. Peat accumulation rates were low (0.1 mm yr− 1) between ca. 5600 and ca. 3000 BP when sedges dominated the peatland. In the last 2500 yrs surface moisture fluctuated with wet events at ca. 2750–2400, and 2000 BP, and dry events at ca. 2250–2100 and 1450 BP. After 1450 BP a trend towards wetter conditions culminated at ca. 500 cal BP, possibly caused by local deforestation. Over the mire history, pH (inferred from testate amoebae) was mostly low (around 5) with two short-lived shifts to alkaline conditions (7.5) at ca. 6100 and 1450 BP indicating a minerotrophic influence from surface run-off into the mire. Up to about 1000 BP the ecological shifts inferred from the three proxies agree with palaeoclimatic records from Poland and Western Europe. After this date, however correlation is less clear suggesting an increasing local anthropogenic impact on the mire. This study confirms that kettle-hole peatlands can yield useful palaeoenvironmental data as well as recording land-use change and calls for more comparable studies in regions are the interface between major climate influences.

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Palaeoecological evidence for anthropogenic acidification of a kettle-hole peatland in northern Poland

2007, Lamentowicz, Mariucz, Tobolski, Kazimierz, Mitchell, Edward

The Holocene developmental history of a small kettle-hole peatland in northern Poland was studied using radiocarbon dating and analyses of pollen, plant macrofossils and testate amoebae with the aim of sorting out the influences of climate change, autogenic succession and human impact. The mire followed the classical succession from lake to a Sphagnum-dominated peatland, but peat accumulation only started about 3000 cal. BP. A rapid shift to wetter conditions, lower pH and higher peat accumulation rate took place about 110—150 years before present, when the vegetation shifted to a Sphagnum-dominated poor fen with some bog plants. While the first shift to a peat-accumulating system was most likely driven by climate, the second one was probably caused by forest clearance around the mire. This shift towards a Sphagnum-dominated vegetation mirrors both in pattern and timing the changes observed in similar situations in North America and New Zealand. While human activities have overall caused the loss of vast expanses of peatlands worldwide in recent centuries, locally they may have also allowed the development of communities that are now ironically considered to have a high conservation value. However, in the case of the site studied the likely anthropogenic shift to bog vegetation was at the expense of a species-rich poor fen, which today has even higher conservation value than ombrotrophic bogs. Thus this study also illustrates the value of palaeoecology for peatland management and biodiversity conservation.