Mitchell, Edward

2014-2-1, Marcisz, Katarzyna, Fournier, Bertrand, Gilbert, Daniel, Lamentowicz, Mariusz, Mitchell, Edward

Peatland testate amoebae (TA) are well-established bioindicators for depth to water table (DWT), but effects of hydrological changes on TA communities have never been tested experimentally. We tested this in a field experiment by placing Sphagnum carpets (15 cm diameter) collected in hummock, lawn and pool microsites (origin) at three local conditions (dry, moist and wet) using trenches dug in a peatland. One series of samples was seeded with microorganism extract from all microsites. TA community were analysed at T0: 8–2008, T1: 5–2009 and T2: 8–2009. We analysed the data using conditional inference trees, principal response curves (PRC) and DWT inferred from TA communities using a transfer function used for paleoecological reconstruction. Density declined from T0 to T1 and then increased sharply by T2. Species richness, Simpson diversity and Simpson evenness were lower at T2 than at T0 and T1. Seeded communities had higher species richness in pool samples at T0. Pool samples tended to have higher density, lower species richness, Simpson diversity and Simpson Evenness than hummock and/or lawn samples until T1. In the PRC, the effect of origin was significant at T0 and T1, but the effect faded away by T2. Seeding effect was strongest at T1 and lowest vanished by T2. Local condition effect was strong but not in line with the wetness gradient at T1 but started to reflect it by T2. Likewise, TA-inferredDWTstarted to match the experimental conditions by T2, but more so in hummock and lawn samples than in pool samples. This study confirmed that TA responds to hydrological changes over a 1-year period. However, sensitivity of TA to hydrological fluctuations, and thus the accuracy of inferred DWT changes, was habitat specific, pool TA communities being least responsive to environmental changes. Lawns and hummocks may be thus better suited than pools for paleoecological reconstructions. This, however, contrasts with the higher prediction error and species’ tolerance for DWT with increasing dryness observed in transfer function models.

2012, Payne, Richard J., Mitchell, Edward, Hung, Nguyen-Viet, Gilbert, Daniel

Peatland testate amoebae are widely used to reconstruct paleohydrological/climatic changes, but many species are also known to respond to pollutants. Peatlands around the world have been exposed to anthropogenic and intermittent natural pollution through the late Holocene. This raises the question: can pollution lead to changes in the testate amoeba paleoecological record that could be erroneously interpreted as a climatic change? To address this issue we applied testate amoeba transfer functions to the results of experiments adding pollutants (N, P, S, Pb, O-3) to peatlands and similar ecosystems. We found a significant effect in only one case, an experiment in which N and P were added, suggesting that pollution-induced biases are limited. However, we caution researchers to be aware of this possibility when interpreting paleoecological records. Studies characterising the paleoecological response to pollution allow pollution impacts to be tracked and distinguished from climate change. (c) 2012 University of Washington. Published by Elsevier Inc. All rights reserved.

2010, Wall, Adeline A. J., Gilbert, Daniel, Magny, Michel, Mitchell, Edward

Testate amoebae are informative about palaeoecological conditions, but the methods generally used for their analyses in lake sediments differ from those used for their analyses in peats, making comparisons difficult. This study examines how filter mesh size and total number of individuals counted affect species richness, Shannon diversity, equitability, density and assemblage structure. We analysed the complete testate amoeba contents of six sediment samples from Lake Lautrey, France. The abundance of testate amoebae was high (1,403–10,870 shells cm⁻³), and species smaller than 63 μm in both length and width represented up to 89% of total abundance and 43% of species richness. A simulation showed that using 47- or 63-μm mesh-size filters reduced inter-sample differences and changed the patterns of abundance, species richness and assemblage structure, causing loss of information and leading to potential erroneous palaeoecological interpretation. Rarefaction analyses suggest that although 170 shells are sufficient to assess the general structure of assemblages, such small sample sizes can underestimate species richness by overlooking taxa with relative abundances <4%. Total counts of 400 shells yield better estimates of assemblage structure and recover at least 50% of total species richness, although species with absolute frequencies below 2% may still be missed. Higher counts are required to obtain reliable estimates of species richness and assemblage structure in samples that have high testate amoeba densities but are dominated by a few small taxa. Further studies should determine the bioindicator value and functional roles of small and/or rare species in lakes and thus to what extent overlooking them affects palaeoecological interpretations.

2008, Artz, Rebekka, Chapman, Steve, Siegenthaler, Andy, Mitchell, Edward, Buttler, Alexandre, Bortoluzzi, Estelle, Gilbert, Daniel, Yli-Petays, Mika, Vasander, Harri, Francez, André-Jean

1. While establishment of vegetation is the most visual indicator of regeneration on cutover peatland, the reinstatement of belowground functions is less well understood. Vegetation succession results in differences in peat quality in terms of C availability. The respiratory response of the soil microbial community to ecologically relevant substrates (community-level physiological profile, CLPP) such as those found in rhizosphere exudates and litter hydrolysates, is thought to reflect the activity and functional diversity of the soil microbial community, especially those involved in turnover of soluble photosynthate-derived C. 2. The relationship between CLPP and typical regeneration stages was investigated at five European peatlands, each with up to five sites representing a gradient of natural regeneration stages. We aimed to determine whether unaided revegetation consistently affected soil microbial CLPP, which environmental factors explained variation in CLPP on the scale of individual peatlands, and if these factors were consistent across different peatlands. 3. Within each peatland, a decomposition index based on diagnostic bands in Fourier transform-infrared spectra indicated that regeneration had generally started from a common base and that the influence of vegetation on the decomposition index declined with depth. In parallel, differences in vegetation cover between regeneration stages resulted in significantly different CLPP, but this effect decreased rapidly with soil depth. The magnitudes of the effect of vegetation succession versus soil depth appeared to be linked with the age range of the regeneration gradients. Hence, the effect of vegetation on CLPP is effectively diluted due to the remaining organic matter. Specific plant species described significant proportions of CLPP variability but these species were not consistent across peatland types. The effects of soil depth appeared to be peatland-specific. 4. Synthesis and applications. Together, the results indicate significant responses of the microbial community to vegetation succession, with the strength of the effect probably dependent on quantities of labile C allocation to the soil microbial community. Therefore, particularly in the early stages of regeneration of cutover peatlands, CLPP could provide vital information about the relative importance of different plant functional types on potential rates of labile C turnover.

2013, Jassey, Vincent E. J., Chiapusio, Genevieve, Binet, Philippe, Buttler, Alexandre, Laggoun-Defarge, Fatima, Delarue, Frederic, Bernard, Nadine, Mitchell, Edward, Toussaint, Marie-Laure, Francez, Andre-Jean, Gilbert, Daniel

Peatlands contain approximately one third of all soil organic carbon (SOC). Warming can alter above- and belowground linkages that regulate soil organic carbon dynamics and C-balance in peatlands. Here we examine the multiyear impact of in situ experimental warming on the microbial food web, vegetation, and their feedbacks with soil chemistry. We provide evidence of both positive and negative impacts of warming on specific microbial functional groups, leading to destabilization of the microbial food web. We observed a strong reduction (70%) in the biomass of top-predators (testate amoebae) in warmed plots. Such a loss caused a shortening of microbial food chains, which in turn stimulated microbial activity, leading to slight increases in levels of nutrients and labile C in water. We further show that warming altered the regulatory role of Sphagnum-polyphenols on microbial community structure with a potential inhibition of top predators. In addition, warming caused a decrease in Sphagnum cover and an increase in vascular plant cover. Using structural equation modelling, we show that changes in the microbial food web affected the relationships between plants, soil water chemistry, and microbial communities. These results suggest that warming will destabilize C and nutrient recycling of peatlands via changes in above- and belowground linkages, and therefore, the microbial food web associated with mosses will feedback positively to global warming by destabilizing the carbon cycle. This study confirms that microbial food webs thus constitute a key element in the functioning of peatland ecosystems. Their study can help understand how mosses, as ecosystem engineers, tightly regulate biogeochemical cycling and climate feedback in peatlands

2011, Jassey, Vincent E. J., Chiapusio, Geneviève, Mitchell, Edward, Binet, Philippe, Toussaint, Marie-Laure, Gilbert, Daniel

The ecology of peatland testate amoebae is well studied along broad gradient from very wet (pool) to dry (hummock) micro-sites where testate amoebae are often found to respond primarily to the depth to water table (DWT). Much less is known on their responses to finer-scale gradients, and nothing is known of their possible response to phenolic compounds, which play a key role in carbon storage in peatlands. We studied the vertical (0–3, 3–6, and 6–9 cm sampling depths) micro-distribution patterns of testate amoebae in the same microhabitat (Sphagnum fallax lawn) along a narrow ecological gradient between a poor fen with an almost flat and homogeneous Sphagnum carpet (fen) and a “young bog” (bog) with more marked micro-topography and mosaic of poor fen and bog vegetation. We analyzed the relationships between the testate amoeba data and three sets of variables (1) “chemical” (pH, Eh potential, and conductivity), (2) “physical” (water temperature, altitude, i.e., Sphagnum mat micro-topography, and DWT), and (3) phenolic compounds in/from Sphagnum (water-soluble and primarily bound phenolics) as well as the habitat (fen/bog) and the sampling depth. Testate amoeba Shannon H′ diversity, equitability J of communities, and total density peaked in lower parts of Sphagnum, but the patterns differed between the fen and bog micro-sites. Redundancy analyses revealed that testate amoeba communities differed significantly in relation to Eh, conductivity, water temperature, altitude, water-soluble phenolics, habitat, and sampling depth, but not to DWT, pH, or primarily bound phenolics. The sensitivity of testate amoebae to weak environmental gradients makes them particularly good integrators of micro-environmental variations and has implications for their use in paleoecology and environmental monitoring. The correlation between testate amoeba communities and the concentration of water-soluble phenolic suggests direct (e.g., physiological) and/or indirect (e.g., through impact on prey organisms) effects on testate amoebae, which requires further research.

2010, Mitchell, Edward, Gilbert, Daniel

2013, Jassey, Vincent E. J., Meyer, Caroline, Dupuy, Christine, Bernard, Nadine, Mitchell, Edward, Toussaint, Marie-Laure, Metian, Marc, Chatelain, Auriel P., Gilbert, Daniel

Although microorganisms are the primary drivers of biogeochemical cycles, the structure and functioning of microbial food webs are poorly studied. This is the case in Sphagnum peatlands, where microbial communities play a key role in the global carbon cycle. Here, we explored the structure of the microbial food web from a Sphagnum peatland by analyzing (1) the density and biomass of different microbial functional groups, (2) the natural stable isotope (delta C-13 and delta N-15) signatures of key microbial consumers (testate amoebae), and (3) the digestive vacuole contents of Hyalosphenia papilio, the dominant testate amoeba species in our system. Our results showed that the feeding type of testate amoeba species (bacterivory, algivory, or both) translates into their trophic position as assessed by isotopic signatures. Our study further demonstrates, for H. papilio, the energetic benefits of mixotrophy when the density of its preferential prey is low. Overall, our results show that testate amoebae occupy different trophic levels within the microbial food web, depending on their feeding behavior, the density of their food resources, and their metabolism (i.e., mixotrophy vs. heterotrophy). Combined analyses of predation, community structure, and stable isotopes now allow the structure of microbial food webs to be more completely described, which should lead to improved models of microbial community function.

2010, Wall, Adeline A. J., Magny, Michel, Mitchell, Edward, Vannière, Boris, Gilbert, Daniel

We tested the response of lacustrine testate amoebae (thecamoebians) to climate and environmental changes for the Lateglacial–Holocene transition. The palaeoenvironmental history of the study site (Lake Lautrey, Jura Mountains, eastern France) was previously established based on high-resolution multi-proxy studies of the same core. The present study is characterised by a high taxonomic resolution (54 taxa), inclusion of small species (down to 25 µm) and high total counts (>500 individuals per sample on average). Changes in the composition of testate amoeba assemblages (dominant species and assemblage structure), as well as in the accumulation rate (tests cm⁻² a⁻¹), corresponded to major climatic phases (i.e. Oldest Dryas, Bølling–Allerød Interstadial, Younger Dryas, Preboreal) as well as changes in organic matter inputs. Furthermore, decreases in the accumulation rate characterised minor short-lived cooling events, such as Older Dryas event or Gerzensee oscillation. However, the Preboreal oscillation, which was well registered by other proxies at Lake Lautrey, could not be recognised in the testate amoeba record. This work demonstrates that lacustrine testate amoebae can be used for palaeoclimatic and palaeoecological reconstructions. Nevertheless, a better understanding of the relation between climate, organic matter and lacustrine testate amoebae requires further high-resolution studies based on multi-proxy approaches and the development of appropriate modern analogues.

2008, Laggoun-Défarge, Fatima, Mitchell, Edward, Gilbert, Daniel, Disnar, Jean-Robert, Comont, Laure, Warner, Barry, Buttler, Alexandre

1. Cut-over peatlands cover large surfaces of high potential value for enhancing biodiversity and carbon sequestration if successfully restored. Unfortunately, evaluation of restoration success is not straightforward. We assessed the bioindicator value of organic matter (OM), testate amoebae (protozoa) and bacteria in peat from two regeneration stages and a reference site of a cut-over bog. 2. Contrasting biochemical signatures of peat OM were observed along the regenerating profiles, allowing clear differentiation between the newly regenerated peat and the old peat. Where peat macrofossils were absent sugar biomarkers were used to infer peat botanical origin and OM alteration. 3. Over the succession, the OM composition of the new peat differed. Peat from the more recent stage was dominated by Sphagnum-derived tissues and characterized by lower carbohydrate preservation and higher bacterial biomass than the advanced regeneration stage. 4. Surface testate amoeba communities also changed from the recent to the advanced stages of regeneration, indicating a shift from wet and moderately acidic conditions to drier and more acidic conditions. Over this regeneration sequence (i) the biomass and average size of species declined but were higher at the unexploited site and (ii) species richness and diversity increased but density declined. 5. Synthesis and applications. Although secondary succession in the cut-over bog led to an ecosystem similar to that of the reference site in terms of surface vegetation, OM and testate amoebae continued to reflect disturbances associated with peat harvesting. Nevertheless, the described dynamics of both microbial and biochemical variables over the succession showed similarities between the advanced stage and the reference site: a higher testate amoeba diversity was associated with better carbohydrate preservation and a more heterogeneous botanical composition of the peat. The inferred water table depth and pH based on testate amoebae indicators proved to be an alternative approach for assessing restoration processes, in contrast to labour-intensive repeated measurements in the field. The botanical and biochemical composition of peat OM provided additional information on past anthropogenic perturbations of the bog and could be used for restoration monitoring. The combination of several indicators therefore provides a more complete assessment of ecological conditions that could be valuable for the management of cut-over peatlands.