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  • Publication
    Accès libre
    Assessing the responses of Sphagnum micro-eukaryotes to climate changes using high throughput sequencing
    (2020-9-18) ;
    Seppey, Christophe Victor William
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    Jassey, Vincent E.J.
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    Buttler, Alexandre
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    Slowinska, Sandra
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    Slowinski, Michal
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    Lamentowicz, Mariusz
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    Current projections suggest that climate warming will be accompanied by more frequent and severe drought events. Peatlands store ca. one third of the world’s soil organic carbon. Warming and drought may cause peatlands to become carbon sources through stimulation of microbial activity increasing ecosystem respiration, with positive feedback effect on global warming. Micro-eukaryotes play a key role in the carbon cycle through food web interactions and therefore, alterations in their community structure and diversity may affect ecosystem functioning and could reflect these changes. We assessed the diversity and community composition of Sphagnum-associated eukaryotic microorganisms inhabiting peatlands and their response to experimental drought and warming using high throughput sequencing of environmental DNA. Under drier conditions, micro-eukaryotic diversity decreased, the relative abundance of autotrophs increased and that of osmotrophs (including Fungi and Peronosporomycetes) decreased. Furthermore, we identified climate change indicators that could be used as early indicators of change in peatland microbial communities and ecosystem functioning. The changes we observed indicate a shift towards a more “terrestrial” community in response to drought, in line with observed changes in the functioning of the ecosystem.
  • Publication
    Accès libre
    Factors modulating cottongrass seedling growth stimulation to enhanced nitrogen and carbon dioxide: compensatory tradeoffs in leaf dynamics and allocation to meet potassium-limited growth
    (2013)
    Siegenthaler, Andy
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    Buttler, Alexandre
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    Grosvernier, Philippe
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    Nilsson, Mats B.
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    Eriophorum vaginatum is a characteristic species of northern peatlands and a keystone plant for cutover bog restoration. Understanding the factors affecting E. vaginatum seedling establishment (i.e. growth dynamics and allocation) under global change has practical implications for the management of abandoned mined bogs and restoration of their C-sequestration function. We studied the responses of leaf dynamics, above- and belowground biomass production of establishing seedlings to elevated CO2 and N. We hypothesised that nutrient factors such as limitation shifts or dilutions would modulate growth stimulation. Elevated CO2 did not affect biomass, but increased the number of young leaves in spring (+400 %), and the plant vitality (i.e. number of green leaves/total number of leaves) (+3 %), both of which were negatively correlated to [K+] in surface porewater, suggesting a K-limited production of young leaves. Nutrient ratios in green leaves indicated either N and K co-limitation or K limitation. N addition enhanced the number of tillers (+38 %), green leaves (+18 %), aboveground and belowground biomass (+99, +61 %), leaf mass-to-length ratio (+28 %), and reduced the leaf turnover (-32 %). N addition enhanced N availability and decreased [K+] in spring surface porewater. Increased tiller and leaf production in July were associated with a doubling in [K+] in surface porewater suggesting that under enhanced N production is K driven. Both experiments illustrate the importance of tradeoffs in E. vaginatum growth between: (1) producing tillers and generating new leaves, (2) maintaining adult leaves and initiating new ones, and (3) investing in basal parts (corms) for storage or in root growth for greater K uptake. The K concentration in surface porewater is thus the single most important factor controlling the growth of E. vaginatum seedlings in the regeneration of selected cutover bogs.
  • Publication
    Accès libre
    Seasonal Net Ecosystem Carbon Exchange of a Regenerating Cutaway Bog: How Long Does it Take to Restore the C-Sequestration Function?
    (2011) ;
    Siegenthaler, Andy
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    Yli-Petays, Mika
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    Buttler, Alexandre
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    Christin, Pascal-Antoine
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    We measured the net ecosystem exchange (NEE) and respiration rates and modeled the photosynthesis and respiration dynamics in a cutover bog in the Swiss Jura Mountains during one growing season at three stages of regeneration (29, 42, and 51 years after peat cutting; coded sites A, B, and C) to determine if reestablishment of Sphagnum suffices to restore the C-sequestration function. From the younger to the older stage Sphagnum cover increased, while net primary Sphagnum production over the growing season decreased (139, 82, and, 67 g m−2 y−1 for A, B, and C respectively), and fen plant species were replaced by bog species. According to our NEE estimations, over the vegetation period site A was a net CO2-C source emitting 40 g CO2-C/m2 while sites B and C were accumulating CO2-C, on average 222 and 209 g CO2-C/m2, respectively. These differences are due to the higher respiration in site A during the summer, suggesting that early regeneration stages may be more sensitive to a warmer climate. Methane fluxes increased from site A to C in parallel with Eriophorum vaginatum cover and vascular plant leaf area. Our results show that reestablishing a Sphagnum cover is not sufficient to restore a CO2-sequestrating function but that after circa 50 years the ecosystem may naturally regain this function over the growing season.
  • Publication
    Accès libre
    Species-specific effects of polyploidisation and plant traits of Centaurea maculosa and Senecio inaequidens on rhizosphere microorganisms
    (2010)
    Thébault, Aurélie
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    Frey, Beat
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    Buttler, Alexandre
    Invasive plant species represent a threat to terrestrial ecosystems, but their effects on the soil biota and the mechanisms involved are not yet well understood. Many invasive species have undergone polyploidisation, leading to the coexistence of various cytotypes in the native range, whereas, in most cases, only one cytotype is present in the introduced range. Since genetic variation within a species can modify soil rhizosphere communities, we studied the effects of different cytotypes and ranges (native diploid, native tetraploid and introduced tetraploid) of Centaurea maculosa and Senecio inaequidens on microbial biomass carbon, rhizosphere total DNA content and bacterial communities of a standard soil in relation to plant functional traits. There was no overall significant difference in microbial biomass between cytotypes. The variation of rhizosphere total DNA content and bacterial community structure according to cytotype was species specific. The rhizosphere DNA content of S. inaequidens decreased with polyploidisation in the native range but did not vary for C. maculosa. In contrast, the bacterial community structure of C. maculosa was affected by polyploidisation and its diversity increased, whereas there was no significant change for S. inaequidens. Traits of S. inaequidens were correlated to the rhizosphere biota. Bacterial diversity and total DNA content were positively correlated with resource allocation to belowground growth and late flowering, whereas microbial biomass carbon was negatively correlated to investment in reproduction. There were no correlations between traits of the cytotypes of C. maculosa and corresponding rhizosphere soil biota. This study shows that polyploidisation may affect rhizosphere bacterial community composition, but that effects vary among plant species. Such changes may contribute to the success of invasive polyploid genotypes in the introduced range.
  • Publication
    Accès libre
    Litter- and ecosystem-driven decomposition under elevated CO2 and enhanced N deposition in a Sphagnum peatland
    (2010)
    Siegenthaler, Andy
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    Buttler, Alexandre
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    Bragazza, Luca
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    van der Heijden, Edwin
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    Grosvernier, Philippe
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    Peatlands represent massive global C pools and sinks. Carbon accumulation depends on the ratio between net primary production and decomposition, both of which can change under projected increases of atmospheric CO2 and N deposition. The decomposition of litter is influenced by 1) the quality of the litter, and 2) the microenvironmental conditions in which the litter decomposes. This study aims at experimentally testing the effects of these two drivers in the context of global change. We studied the in situ litter decomposition from three common peatland species (Eriophorum vaginatum, Polytrichum strictum and Sphagnum fallax) collected after one year of litter production under pre-treatment conditions (elevated CO2: 560 ppm or enhanced N: 3 g m−2 y−1 NH4NO3) and decomposed the following year under treatment conditions (same as pre-treatment). By considering the cross-effects between pre-treatments and treatments, we distinguished between the effects on mass loss of 1) the pre-treatment-induced litter quality and 2) the treatment conditions under which the litters were decomposing. The combination between CO2 pre-treatment and CO2 treatment reduced Polytrichum decomposition by −24% and this can be explained by litter quality-driven decomposition changes brought by the pre-treatment. CO2 pre-treatment reduced Eriophorum litter quality, although this was not sufficient to predict decomposition. The N addition pre-treatment reduced the decomposition of Eriophorum, due to enhanced lignin and soluble phenols concentrations in the initial litter, and reduced litter-driven losses of starch and enhanced litter-driven losses of soluble phenols. While decomposition indices based on initial litter quality provide a broad explanation of quantitative and qualitative decomposition, they can only be taken as first approximations. Indeed, the microbial ATP activity, the litter N loss and resulting litter quality, were strongly altered irrespective of the compounds' initial concentration and by means of processes that occurred independently of the initial litter-qualitative changes. The experimental design was valuable to assess litter- and ecosystem-driven decomposition pathways simultaneously or independently. The ability to separate these two drivers makes it possible to attest the presence of litter-qualitative changes even without any litter biochemical determinations, and shows the screening potential of this approach for future experiments dealing with multiple plant species.
  • Publication
    Accès libre
    Functional microbial diversity in regenerating cutover peatlands responds to vegetation succession
    (2008)
    Artz, Rebekka R. E.
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    Chapman, Stephen J.
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    Siegenthaler, Andy
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    Buttler, Alexandre
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    Bortoluzzi, Estelle
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    Gilbert, Daniel
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    Yli-Petays, Mika
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    Vasander, Harri
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    Francez, André-Jean
    1. While establishment of vegetation is the most visual indicator of regeneration on cutover peatland, the reinstatement of belowground functions is less well understood. Vegetation succession results in differences in peat quality in terms of C availability. The respiratory response of the soil microbial community to ecologically relevant substrates (community-level physiological profile, CLPP) such as those found in rhizosphere exudates and litter hydrolysates, is thought to reflect the activity and functional diversity of the soil microbial community, especially those involved in turnover of soluble photosynthate-derived C.
    2. The relationship between CLPP and typical regeneration stages was investigated at five European peatlands, each with up to five sites representing a gradient of natural regeneration stages. We aimed to determine whether unaided revegetation consistently affected soil microbial CLPP, which environmental factors explained variation in CLPP on the scale of individual peatlands, and if these factors were consistent across different peatlands.
    3. Within each peatland, a decomposition index based on diagnostic bands in Fourier transform-infrared spectra indicated that regeneration had generally started from a common base and that the influence of vegetation on the decomposition index declined with depth. In parallel, differences in vegetation cover between regeneration stages resulted in significantly different CLPP, but this effect decreased rapidly with soil depth. The magnitudes of the effect of vegetation succession versus soil depth appeared to be linked with the age range of the regeneration gradients. Hence, the effect of vegetation on CLPP is effectively diluted due to the remaining organic matter. Specific plant species described significant proportions of CLPP variability but these species were not consistent across peatland types. The effects of soil depth appeared to be peatland-specific.
    4. Synthesis and applications. Together, the results indicate significant responses of the microbial community to vegetation succession, with the strength of the effect probably dependent on quantities of labile C allocation to the soil microbial community. Therefore, particularly in the early stages of regeneration of cutover peatlands, CLPP could provide vital information about the relative importance of different plant functional types on potential rates of labile C turnover.
  • Publication
    Accès libre
    Plant Litter Decomposition and Nutrient Release in Peatlands
    (2008)
    Bragazza, Luca
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    Buttler, Alexandre
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    Siegenthaler, Andy
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    Decomposition of plant litter is a crucial process in controlling the carbon balance of peatlands. Indeed, as long as the rate of litter decomposition remains lower than the rate of above- and belowground litter production, a net accumulation of peat and, thus, carbon will take place. In addition, decomposition controls the release of important nutrients such as nitrogen, phosphorus, and potassium, the availability of which affects the structure and the functioning of plant communities. This chapter describes the role of the main drivers in affecting mass loss and nutrient release from recently deposited plant litter. In particular, the rate of mass loss of Sphagnum litter and vascular plant litter is reviewed in relation to regional climatic conditions, aerobic/anaerobic conditions, and litter chemistry. The rate of nutrient release is discussed in relation to the rate of mass loss and associated litter chemistry by means of a specific case study.
  • Publication
    Accès libre
    Effects of experimental warming on carbon sink function of a temperate pristine mire : the PEATWARM project
    (2008)
    Laggoun-Défarge, Fatima
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    Gilbert, Daniel
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    Buttler, Alexandre
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    Epron, Daniel
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    Francez, Andre-Jean
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    Grasset, Laurent
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    Guimbaud, Christophe
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    Roy, J.-C.
    Within the PEATWARM project, we use Sphagnumpeatlands as a model to analyse their vulnerability to climate change using an experimental system (ITEX) that simulates in situan increase in average temperature. We aim to determine the effects of temperature increase on the vegetation, the balance of above- and belowground gas fluxes (CO2and CH4), the microbial diversity and activity in Sphagnummosses and in peat, and the dynamics of labile and recalcitrant organic matter of peat. The ultimate objective is the creation of a biogeochemical model of C coupled with N and S cycles that includes interactions between these key compartments.
  • Publication
    Accès libre
    Cut-over peatland regeneration assessment using organic matter and microbial indicators (bacteria and testate amoebae)
    (2007)
    Laggoun-Défarge, Fatima
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    Gilbert, Daniel
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    Disnar, Jean-Robert
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    Comont, Laure
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    Warner, Barry G.
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    Buttler, Alexandre
    1. Cut-over peatlands cover large surfaces of high potential value for enhancing biodiversity and carbon sequestration if successfully restored. Unfortunately, evaluation of restoration success is not straightforward. We assessed the bioindicator value of organic matter (OM), testate amoebae (protozoa) and bacteria in peat from two regeneration stages and a reference site of a cut-over bog.
    2. Contrasting biochemical signatures of peat OM were observed along the regenerating profiles, allowing clear differentiation between the newly regenerated peat and the old peat. Where peat macrofossils were absent sugar biomarkers were used to infer peat botanical origin and OM alteration.
    3. Over the succession, the OM composition of the new peat differed. Peat from the more recent stage was dominated by Sphagnum-derived tissues and characterized by lower carbohydrate preservation and higher bacterial biomass than the advanced regeneration stage. 4. Surface testate amoeba communities also changed from the recent to the advanced stages of regeneration, indicating a shift from wet and moderately acidic conditions to drier and more acidic conditions. Over this regeneration sequence (i) the biomass and average size of species declined but were higher at the unexploited site and (ii) species richness and diversity increased but density declined.
    5.Synthesis and applications. Although secondary succession in the cut-over bog led to an ecosystem similar to that of the reference site in terms of surface vegetation, OM and testate amoebae continued to reflect disturbances associated with peat harvesting. Nevertheless, the described dynamics of both microbial and biochemical variables over the succession showed similarities between the advanced stage and the reference site: a higher testate amoeba diversity was associated with better carbohydrate preservation and a more heterogeneous botanical composition of the peat. The inferred water table depth and pH based on testate amoebae indicators proved to be an alternative approach for assessing restoration processes, in contrast to labour-intensive repeated measurements in the field. The botanical and biochemical composition of peat OM provided additional information on past anthropogenic perturbations of the bog and could be used for restoration monitoring. The combination of several indicators therefore provides a more complete assessment of ecological conditions that could be valuable for the management of cut-over peatlands.
  • Publication
    Accès libre
    Comment réagissent les tourbières aux changements planétaires ?: Le réchauffement climatique, obstacle à la régénération
    (2007)
    Buttler, Alexandre
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    Les marais de l’hémisphère nord contien-nent 40 à 60% du carbone présent dansl’atmosphère sous forme de CO2. Pour queles surfaces exploitées produisent à nou-veau de la tourbe et accumulent ainsi lecarbone, il faut les régénérer. Plusieursprojets de recherche européens s’intéres-sent au processus de régénération. Ilsétudient également quels effets ont leréchauffement climatique, les variationsau régime hydrologique et les apports ensubstances nutritives sur l’aptitude destourbières à emmagasiner le carbone.