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Mitchell, Edward

Nom
Mitchell, Edward
Affiliation principale
Site web
Fonction
Professeur ordinaire
Email
edward.mitchell@unine.ch
Identifiants
https://libra.unine.ch/handle/123456789/357
_
0000-0003-0358-506X

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  • Publication
    Métadonnées seulement
    Ribosomal RNA genes challenge the monophyly of the hyalospheniidae (Amoebozoa : Arcellinida)
    (2008)
    Lara, Enrique 
    ;
    Heger, Thierry J
    ;
    Ekelund, Flemming
    ;
    Lamentowicz, Mariusz
    ;
    Mitchell, Edward 
    To date only five partial and two complete SSU rRNA gene sequences are available for the lobose testate amoebae (Arcellinida). Consequently, the phylogenetic relationships among taxa and the definition of species are still largely dependant on morphological characters of uncertain value, which causes confusion in the phylogeny, taxonomy and the debate on cosmopolitanism of free-living protists. Here we present a SSU rRNA-based phylogeny of the Hyalospheniidae including the most common species. Similar to the filose testate amoebae of the order Euglyphida the most basal clades have a terminal aperture; the ventral position of the pseudostome appears to be a derived character. Family Hyalospheniidae appears paraphyletic and is separated into three clades: (1) Heleopera sphagni, (2) Heleopera rosea and Argynnia dentistoma and (3) the rest of the species from genera Apodera, Hyalosphenia, Porosia and Nebela. Our data support the validity of morphological characters used to define species among the Hyalospheniidae and even suggest that taxa described as varieties may deserve the rank of species (e.g. N. penardiana var. minor). Finally our results suggest that the genera Hyalosphenia and Nebela are paraphyletic, and that Porosia bigibbosa branches inside the main Nebela clade. (c) 2007 Elsevier GmbH. All rights reserved.
  • Publication
    Métadonnées seulement
    Cut-over peatland regeneration assessment using organic matter and microbial indicators (bacteria and testate amoebae)
    (2008)
    Laggoun-Défarge, Fatima
    ;
    Mitchell, Edward 
    ;
    Gilbert, Daniel
    ;
    Disnar, Jean-Robert
    ;
    Comont, Laure
    ;
    Warner, Barry
    ;
    Buttler, Alexandre
    1. Cut-over peatlands cover large surfaces of high potential value for enhancing biodiversity and carbon sequestration if successfully restored. Unfortunately, evaluation of restoration success is not straightforward. We assessed the bioindicator value of organic matter (OM), testate amoebae (protozoa) and bacteria in peat from two regeneration stages and a reference site of a cut-over bog. 2. Contrasting biochemical signatures of peat OM were observed along the regenerating profiles, allowing clear differentiation between the newly regenerated peat and the old peat. Where peat macrofossils were absent sugar biomarkers were used to infer peat botanical origin and OM alteration. 3. Over the succession, the OM composition of the new peat differed. Peat from the more recent stage was dominated by Sphagnum-derived tissues and characterized by lower carbohydrate preservation and higher bacterial biomass than the advanced regeneration stage. 4. Surface testate amoeba communities also changed from the recent to the advanced stages of regeneration, indicating a shift from wet and moderately acidic conditions to drier and more acidic conditions. Over this regeneration sequence (i) the biomass and average size of species declined but were higher at the unexploited site and (ii) species richness and diversity increased but density declined. 5. Synthesis and applications. Although secondary succession in the cut-over bog led to an ecosystem similar to that of the reference site in terms of surface vegetation, OM and testate amoebae continued to reflect disturbances associated with peat harvesting. Nevertheless, the described dynamics of both microbial and biochemical variables over the succession showed similarities between the advanced stage and the reference site: a higher testate amoeba diversity was associated with better carbohydrate preservation and a more heterogeneous botanical composition of the peat. The inferred water table depth and pH based on testate amoebae indicators proved to be an alternative approach for assessing restoration processes, in contrast to labour-intensive repeated measurements in the field. The botanical and biochemical composition of peat OM provided additional information on past anthropogenic perturbations of the bog and could be used for restoration monitoring. The combination of several indicators therefore provides a more complete assessment of ecological conditions that could be valuable for the management of cut-over peatlands.
  • Publication
    Accès libre
    SSU rRNA reveals a sequential increase in shell complexity among the euglyphid testate amoebae (Rhizaria : Euglyphida)
    (2007)
    Lara, Enrique 
    ;
    Heger, Thierry J
    ;
    Mitchell, Edward 
    ;
    Meisterfeld, Ralf
    ;
    Ekelund, Flemming
    The existing data on the molecular phylogeny of filose testate amoebae from order Euglyphida has revealed contradictions between traditional morphological classification and SSU rRNA phylogeny and, moreover, the position of several important genera remained unknown. We therefore carried out a study aiming to fill several important gaps and better understand the relationships among the main euglyphid testate amoebae and the evolutionary steps that led to the present diversity at a higher level. We obtained new SSU rRNA sequences from five genera and seven species. This new phylogeny obtained shows that (1) the clade formed by species of genera Assulina and Placocista branches unambiguously at the base of the subclade of Euglyphida comprising all members of the family Trinematidae and genus Euglypha, (2) family Trinematidae (Trachelocorythion, Trinema, and Corythion) branches as a sister group to genus Euglypha, (3) three newly sequenced Euglypha species (E. cf. ciliata, E. penardi, and E. compressa) form a new clade within the genus. Since our results show that Assulina and Placocista do not belong to the Euglyphidae (unless the Trinematidae are also included in this family), we propose the creation of a new family named Assulinidae. Consequently, we give a family status to the genera Euglypha and (tentatively) Scutiglypha, which become the new family Euglyphidae. The evolutionary pattern suggested by SSU rRNA phylogeny shows a clear tendency towards increasing morphological complexity of the shell characterised by changes in the symmetry (migration of the aperture to a ventral position and/or compression of the shell) and the appearance of specialised scales at the aperture (in families Trinematidae and Euglyphidae). (C) 2007 Elsevier GmbH. All rights reserved.
  • Publication
    Métadonnées seulement
    Relationship between testate amoeba (Protist) communities and atmospheric heavy metals accumulated in Barbula indica (Bryophyta) in vietnam
    (2007)
    Nguyen-Viet, Hung
    ;
    Bernard, Nadine
    ;
    Mitchell, Edward 
    ;
    Cortet, J
    ;
    Badot, Pierre-Marie
    ;
    Gilbert, Daniel
    We studied the relationships between testate amoeba communities and heavy metal (Pb, Cd, Zn, Ni, Cu, Mn, and Fe) concentrations in the moss Barbula indica sampled at 29 sites in and around the city of Hanoi (Vietnam). Our first approach was to compare the heavy metal concentrations and testate amoeba variables between the city (zone 1) and the surrounding (zone 2). Mean moss concentrations of Pb, Cd, Zn, Ni, and Cu were significantly higher and testate amoeba species richness and abundance were significantly lower in zone 1 and the abundance of eight taxa differed significantly between the two zones. We then studied the correlation between heavy metals and testate amoebae. Species richness and abundance were correlated negatively to Pb concentration. Shannon H' was negatively correlated to both Pb and Cd. The abundance of several species was negatively correlated with Pb, Cd, Zn, and Ni; however, at the community level, Pb emerged as the only significant variable in a redundancy analysis. Our results suggest that testate amoebae are sensitive to and may be good bioindicators for heavy metal pollution, especially lead. Further research is needed to understand the causal relationships underlying the observed patterns.
  • Publication
    Accès libre
    Changes in testate amoebae (Protists) communities in a small raised bog. A 40-year study
    (2005)
    Kishaba, Keiko
    ;
    Mitchell, Edward 
    We analyzed the testate amoebae communities from two sets of moss samples taken forty years apart ( 1961 and 2001) in the same locations of a peat bog of the Swiss Jura Mountains. Peat Cutting and lateral drainage of Le Cachot bog have caused a clear increase in tree cover, especially near the edges. Changes affecting herbaceous plants, mosses. or soil organisms can be subtle, and may easily be overlooked. We hypothesized that we would see changes in the dominant Sphagnum species and the structure of testate amoebae communities living in the mosses. More specifically, we hypothesized that the frequency of bryophyte and testate amoebae species indicative for dry conditions Would increase and that the frequency of species indicative for wet conditions would decrease. The mean testate amoebae species richness per sample decreased from 11.9 to 9.6, but the overall species richness was identical (33 species) in both years. Three species increased significantly in mean relative abundance: Nebela tincta s.l. (+97 %), Bullinularia indica (+ 810 %), and Cyclopyxis eurystoma (+ 100 %; absent in 1961), while two species decreased significantly: Assulina muscorum (- 63 %) and Euglypha compressa (-93 %). The testate amoebae communities clearly differed among microhabitat types (hummocks, lawns, hollows), but no overall significant change in the community was detectable between the two sampling dates (Mantel test). These results could signify that changes at the microscopic level had already taken place by 1961 and no further overall significant changes in micro-enviromental conditions took place during the 40-year period of this Study. This Would agree with the faster response time usually attributed to microorganisms and would also imply that the bushes and trees may be poor predictors of the response of microorganisms if they are themselves in a non-equilibrium stage. Other possible causes for the lack of overall differences are discussed.
  • Publication
    Métadonnées seulement
    The testate lobose amoebae (order Arcellinida Kent, 1880) finally find their home within Amoebozoa
    (2005)
    Nikolaev, Sergey I
    ;
    Mitchell, Edward 
    ;
    Petrov, Nikolay B
    ;
    Berney, Cédric
    ;
    Fahrni, José
    ;
    Pawlowski, Jan
    Testate lobose amoebae (order Arcellinida Kent, 1880) are common in all aquatic and terrestrial habitats, yet they are one of the last higher taxa of unicellular eukaryotes that has not found its place in the tree of life. The morphological approach did not allow to ascertain the evolutionary origin of the group or to prove its monophyly. To solve these challenging problems, we analyzed partial small-subunit ribosomal RNA (SSU rRNA) genes of seven testate lobose amoebae from two out of the three suborders and seven out of the 13 families belonging to the Arcellinida. Our data support the monophyly of the order and clearly establish its position among Amoebozoa, as a sister-group to the clade comprising families Amoebidae and Hartmannellidae. Complete SSU rRNA gene sequences from two species and a partial actin sequence from one species confirm this position. Our phylogenetic analyses including representatives of all sequenced lineages of lobose amoebae suggest that a rigid test appeared only once during the evolution of the Amoebozoa, and allow reinterpretation of some morphological characters used in the systematics of Arcellinida. (c) 2005 Published by Elsevier GmbH.
  • Publication
    Métadonnées seulement
    Response of testate amoebae (protozoa) to N and P fertilization in an arctic wet sedge tundra
    (2004)
    Mitchell, Edward 
    There are few data on the effect of long-term manipulations on soil protozoa, and almost nothing is known about soil protozoa in Alaska. I studied the response of testate amoebae to nitrogen and phosphorus addition in an Arctic fen, at Toolik Lake Long-Term Experimental Research (LTER) Station, Alaska. Testate amoebae were extracted from Sphagnum mosses in control and fertilized plots. Of the 35 testate amoebae taxa recorded, 7 are first observations for the Arctic (excluding Russia) and 14 for Alaska. The total density and biomass of testate amoebae were significantly reduced, by 77% and 84%, in the fertilized plots. The structure of testate amoebae communities was also modified in those plots, although for most taxa the changes were not significant. Four taxa (Amphitrema flavum, Assulina muscorum, Placocista spinosa ssp. hyalina, and Hyalosphenia papilio) accounted for over half of the population in the control plots but only for 11% in the N and P plots. The densities of A. muscorum and Difflugia oviformis were significantly lower in the N and P-treated plots. The relative abundance and contribution to biomass of Centropyxis aerophila, Phryganella acropodia, and Tracheleuglypha dentata increased in the fertilized plots, while that of D. oviformis decreased. These effects suggest that testate amoebae respond to nutrient manipulations in the Arctic.
  • Publication
    Accès libre
    Horizontal distribution patterns of testate amoebae (Protozoa) in a Sphagnum magellanicum carpet
    (2000-5-2)
    Mitchell, Edward 
    ;
    Borcard, D.
    ;
    Buttler, Alexandre
    ;
    Grosvernier, Philippe
    ;
    Gilbert, Daniel
    ;
    Gobat, Jean-Michel 
    The distribution of soil microorganisms is generally believed to be patchy and to reflect habitat heterogeneity. Despite this general rule, the amount of existing data oil species distribution patterns is scarce. Testate amoebae (Protozoa; Rhizopoda) are an important component of soil microbial communities and are increasingly used in ecological and paleoecological studies of Sphagnum-dominated peatlands, but data on the spatial structure of communities are completely lacking. This is an important aspect since quantitative models used for paleoecological reconstruction and monitoring are based on species assemblages. We explored the distribution patterns of testate amoebae distribution in a macroscopically homogeneous Sphagnum carpet, down to a scale of several centimeters. Distributions maps of the species and spatially constrained sample groups were produced. Multivariate and individual spatial autocorrelations were calculated. The importance of spatial structure was quantified by canonical correspondence analysis. Our ultimate goal is to find the finest resolution of environmental monitoring using testate amoebae. The distribution patterns differed among species, resulting in a complex spatial structure of the species assemblage in a whole. Spatial structure accounted for 36% of the total variation of species abundance in a canonical correspondence analysis constrained by spatial variables. This structure was partly correlated to altitude (microtopography) at a very fine scale. These results confirmed the existence of significant broad-and fine-scale spatial structures within restate amoebae communities that could in parr be interpreted as effects of ecological gradients. This shows that, on a surface area of 0.25 m(2), ecological conditions which look uniform from a macroscopic point of view are not perceived as such by Sphagnum-inhabiting organisms. Therefore, restate amoebae could prove very useful to monitor fine-scale ecological processes or disturbances. Studies of the species' spatial distribution patterns in combination with autoecological studies are needed and should be included in the toolbox of biomonitoring itself.
  • Publication
    Métadonnées seulement
    Relationships among testate amoebae (Protozoa), vegetation and water chemistry in five Sphagnum-dominated peatlands in Europe
    (2000)
    Mitchell, Edward 
    ;
    Buttler, Alexandre
    ;
    Grosvernier, Philippe
    ;
    Rydin, Hakan
    ;
    Albinsson, Christer
    ;
    Greenup, Alisson
    ;
    Heijmans, Monique
    ;
    Hoosbeek, Marcel
    ;
    Saarinen, Timo
    To study the relationships between groups of organisms and the degree to which these relationships are consistent across major climatic gradients, we analysed the testate amoeba (Protozoa) communities, vegetation and water chemistry of one peatland in five countries: Switzerland, The Netherlands, Great Britain, Sweden and Finland, as part of the BERI (Bog Ecosystem Research Initiative) project. The relationships between the different data sets and subsets were investigated by means of detrended correspondence analysis, canonical correspondence analysis and Mantel permutation tests. The comparison of data on vegetation and testate amoebae showed that inter-site differences are more pronounced for the vegetation than for the testate amoebae species assemblage. Testate amoebae are a useful tool in multi-site studies and in environmental monitoring of peatlands because: (1) the number of species in Sphagnum-dominated peatlands is much higher than for mosses or vascular plants; (2) most peatland species are cosmopolitan in their distributions and therefore less affected than plants by biogeographical distribution patterns, thus differences in testate amoeba assemblages can be interpreted primarily in terms of ecology; (3) they are closely related to the ecological characteristics of the exact spot where they live, therefore they can be used to analyse small-scale gradients that play a major role in the functioning of peatland ecosystems. This study revealed the existence of small-scale vertical gradients within the vegetation and life-form niche separation in response to water chemistry. The deep-rooted plants such as Carex spp. and Eriophorum spp. are related to the chemistry of water sampled at or near the ground water table, whereas the mosses are not. Testate amoebae wereshown to be ecologically more closely related to the chemistry of water sampled at or near the water table level and to the mosses than to the deep-rooted plants.