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  • Publication
    Accès libre
    Soil chemistry changes beneath decomposing cadavers over a one-year period
    Decomposing vertebrate cadavers release large, localized inputs of nutrients. These temporally limited resource patches affect nutrient cycling and soil organisms. The impact of decomposing cadavers on soil chemistry is relevant to soil biology, as a natural disturbance, and forensic science, to estimate the postmortem interval. However, cadaver impacts on soils are rarely studied, making it difficult to identify common patterns. We investigated the effects of decomposing pig cadavers (Sus scrofa domesticus) on soil chemistry (pH, ammonium, nitrate, nitrogen, phosphorous, potassium and carbon) over a one-year period in a sprucedominant forest. Four treatments were applied, each with five replicates: two treatments including pig cadavers (placed on the ground and hung one metre above ground) and two controls (bare soil and bags filled with soil placed on the ground i.e. “fake pig” treatment). In the first two months (15–59 days after the start of the experiment), cadavers caused significant increases of ammonium, nitrogen, phosphorous and potassium (p < 0.05) whereas nitrate significantly increased towards the end of the study (263–367 days; p < 0.05). Soil pH increased significantly at first and then decreased significantly at the end of the experiment. After one year, some markers returned to basal levels (i.e. not significantly different from control plots), whereas others were still significantly different. Based on these response patterns and in comparison with previous studies, we define three categories of chemical markers that may have the potential to date the time since death: early peak markers (EPM), late peak markers (LPM) and late decrease markers (LDM). The marker categories will enhance our understanding of soil processes and can be highly useful when changes in soil chemistry are related to changes in the composition of soil organism communities. For actual casework further studies and more data are necessary to refine the marker categories along a more precise timeline and to develop a method that can be used in court.
  • Publication
    Accès libre
    Comparative ecology of vascular plant, bryophyte and testate amoeba communities in four Sphagnum peatlands along an altitudinal gradient in Switzerland
    (2015-3-4) ;
    Feldmeyer-Christe, Elizabeth
    ;
    Monitoring tools are needed to assess changes in peatland biotic communities and ecosystem functions inresponse to on-going climate and other environmental changes. Although the responses of soil organismsand plants to ecological gradients and perturbations do not always correlate, peatland monitoring ismainly based on vegetation surveys. Testate amoebae, a group of protists, are important contributorsto carbon and nitrogen cycling in organic soils and are useful bioindicators in peatland ecology andpaleoecology. There is however little comparative data on the value of testate amoebae, vascular plantsand bryophytes as bioindicators of micro-environmental gradients in peatlands.We compared the relationships of testate amoebae, bryophytes, and vascular plants with soil tempera-ture, water table depth, micro-habitats and the carbon and nitrogen content of Sphagnum mosses in fourpeatlands along a 1300 m altitudinal gradient in Switzerland. We used the full diversity of vascular plantsand bryophyte but only a selection of ten easily identifiable testate amoeba morpho-taxa (i.e. species orspecies-complexes).Indirect and direct gradient ordinations, multiple factor analysis (MFA) and transfer function modelsfor inferring water table depth showed that a selection of ten testate amoeba taxa are more powerful (%variance explained in RDA) and accurate (discrimination among habitats) indicators of local conditions(micro-habitat type, water table depth and Sphagnum C/N ratio) than the vegetation (vascular plants andbryophytes either individually or combined and considering the full diversity).Our study showed that a limited list of ten easily identifiable testate amoeba taxa have higher bioindi-cation value than the full bryophytes and vascular plants. Furthermore, testate amoebae can be analyzedon samples collected at any season (accessibility allowing and if precise sampling sites are well marked)– a clear advantage for biomonitoring and can be used to infer past changes from the peat record at thesame taxonomic resolution. This simple approach could therefore be very useful for biomonitoring ofpeatlands.
  • Publication
    Accès libre
    Soil chemistry changes beneath decomposing cadavers over a one-year period
    Szelecz, Ildikò
    ;
    ;
    Seppey, Christophe V. W
    ;
    ;
    Decomposing vertebrate cadavers release large, localized inputs of nutrients. These temporally limited resource patches affect nutrient cycling and soil organisms. The impact of decomposing cadavers on soil chemistry is relevant to soil biology, as a natural disturbance, and forensic science, to estimate the postmortem interval. However, cadaver impacts on soils are rarely studied, making it difficult to identify common patterns.
    We investigated the effects of decomposing pig cadavers (Sus scrofa domesticus) on soil chemistry (pH, ammonium, nitrate, nitrogen, phosphorous, potassium and carbon) over a one-year period in a sprucedominant forest. Four treatments were applied, each with five replicates: two treatments including pig cadavers (placed on the ground and hung one metre above ground) and two controls (bare soil and bags filled with soil placed on the ground i.e. “fake pig” treatment). In the first two months (15–59 days after the start of the experiment), cadavers caused significant increases of ammonium, nitrogen, phosphorous and potassium (p <0.05) whereas nitrate significantly increased towards the end of the study (263–367 days; p <0.05). Soil pH increased significantly at first and then decreased significantly at the end of the experiment. After one year, some markers returned to basal levels (i.e. not significantly different from control plots), whereas others were still significantly different. Based on these response patterns and in comparison with previous studies, we define three categories of chemical markers that may have the potential to date the time since death: early peak markers (EPM), late peak markers (LPM) and late decrease markers (LDM).
    The marker categories will enhance our understanding of soil processes and can be highly useful when changes in soil chemistry are related to changes in the composition of soil organism communities. For actual casework further studies and more data are necessary to refine the marker categories along a more precise timeline and to develop a method that can be used in court.
  • Publication
    Accès libre
    Response of Sphagnum Testate Amoebae to Drainage, Subsequent Re-wetting and Associated Changes in the Moss Carpet: Results from a Three Year Mesocosm Experiment
    Sphagnum peatlands represent a globally significant pool and sink of carbon but these functions are threatened by ongoing climate change. Testate amoebae are useful bioindicators of hydrological changes, but little experimental work has been done on the impact of water table changes on communities.
    Using a mesocosm experimental setting that was previously used to assess the impact of drought disturbance on communities and ecosystem processes with three contrasted water table positions: wet (–4 cm), intermediate (–15 cm) and dry (–25 cm), we studied the capacity of testate amoeba communities to recover when the water table was kept at –10 cm for all plots. The overall experiment lasted three years. We assessed the taxonomic and functional trait responses of testate amoeba communities. The selected traits were hypothesised to be correlated to moisture content (response traits: shell size, aperture position) or trophic role (effect traits: mixotrophy, aperture size controlling prey range).
    During the disturbance phase, the mixotrophic species Hyalosphenia papilio dominated the wet and intermediate plots, while the community shifted to a dominance of “dry indicators” (Corythion dubium, Nebela tincta, Cryptodifflugia oviformis) and corresponding traits (loss of mixotrophy, and dominance of smaller taxa with ventral or ventral-central aperture) in dry plots. During the recovery phase we observed two contrasted trends in the previously wet and intermediate plots: communities remained similar where the Sphagnum carpet remained intact but species and traits indicators of drier conditions increased in plots where it had degraded. In the former dry plots, indicators and traits of wet conditions increased by the end of the experiment.
    This is one of the first experiment simulating a disturbance and subsequent recovery in ex-situ mesocosms of Sphagnum peatland focusing on the response of testate amoebae community structure as well as functional traits to water table manipulation. The results generally confirmed that testate amoebae respond within a few months to hydrological changes and thus represent useful bioindicators for assessing current and past hydrological changes in Sphagnum peatlands.
  • Publication
    Accès libre
    Impact of two hot and dry summers on the community structure and functional diversity of testate amoebae in an artificial bog, illustrating their use as bioindicators of peatland health
    ;
    Christinat, K
    ;
    d’Inverno, Mirko
    ;
    Ongoing climate warming threatens the survival of bogs at the warm/dry limit of their distribution (e.g. in central Europe), and jeopardises the restoration of damaged bogs even more. Because vegetation changes can be slow, early indicators of hydrological change such as testate amoebae are useful. We used testate amoeba community structure and community weighted mean of functional traits to monitor the impact of two very hot and dry summers on a small (around 100 m2) artificial peatland constructed in the botanic garden of Neuchâtel, Switzerland. We collected analogous samples in a naturally regenerating cutover peatland at 1000 m a.s.l. in the Jura Mountains as a reference. The comparison of living and dead assemblages in the botanic garden showed an increased representation of smaller testate amoeba taxa (Corythion dubium, small Euglypha sp.) with a small pseudostome (indicative of dry conditions) and a loss of mixotrophy in 2015, followed by a weaker further shift in 2016. Nevertheless, the testate amoeba community structure in 2016 still indicated a dry Sphagnum bog. Testate amoeba analysis allows rapid assessment of peatland health and/or restoration success. The comparison of living and dead assemblages makes it possible to observe changes within a season in a single sampling campaign.
  • Publication
    Accès libre
    Taxonomic and functional traits responses of Sphagnum peatland testate amoebae to experimentally manipulated water table
    ;
    Mulot, Matthieu, Laboratory of Soil Diversity, University of Neuchâtel, Switzerland
    ;
    Biomonitoring tools are useful to assess the impact of environmental changes on the functioning of ecosystems. Existing tools mostly require species identification, thus allowing to estimating changes in biodiversity, and possibly inferring ecosystem functioning, using functional diversity and traits based approaches.
    Testate amoebae are good indicators of surface moisture conditions in Sphagnum peatlands and are routinely used in palaeoecology. Their shells (tests), on which identification is based, can also be used to define functional traits and thus to infer changes in ecosystem functioning.
    We investigated the response of testate amoeba communities to manipulated water table depth (wet: −4 cm, intermediate: −15 cm, and dry: −25 cm) over time (seven time points, 19 months) using mesocosms by comparing two approaches: community structure and functional traits responses, using a combination of morphological (biovolume, length, aperture size and position) and physiological (mixotrophy/heterotrophy, shell material) traits.
    This is the first study investigating the effect of water table depth on testate amoeba assemblages over time using a mesocosm approach. Taxonomical and functional approaches showed similar response patterns, confirming that water level acted as a strong environmental filter. After one year Hyalosphenia papilio decreased in the dry treatment, and the community structure shifted towards a dominance of dry indicators (Nebela tincta complex, Corythion dubium, Euglypha compressa) and the selected functional traits (smaller, heterotrophic, compressed species, with a ventral aperture) corresponded to drought adaptations.
    In line with recent observational and transfer function studies exploring the use of testate amoebae functional traits, our experimental results illustrate how well-selected traits could be used to monitor the impact of present and past climatic changes on Sphagnum peatlands.
  • Publication
    Accès libre
    Creation of a raised bog in the Botanical garden of Neuchâtel: a tool for research, collections and public information
    Mulhauser, Blaise
    ;
    ;
    Tritz, Jérémy
    ;
    Gueniat, Sylvian
    ;
    ;
    D’Inverno, Mirko
    ;
    In September 2014 we created a small raised bog of ca. 100m2 in the Botanical garden of Neuchâtel. The material (marl and peat) was collected from a degraded peatland in an industrial area of the region. The bog was planted with over 30 species of mosses and vascular plants collected from bogs in the Jura Mountains and from existing collections.
    This object corresponds to the three missions of the garden : 1) to inform the public as well as students about these unusual, fragile and threatened ecosystems, 2) to present characteristic peatland plants from the Jura Mountains (Sphagnum, Drosera, Eriophorum, Betula nana, etc.), and 3) to conduct research projects.
    During the winter 2014-15, the snow remained longer on the peatbog that on the adjacent path and meadow, thus providing evidence for a microclimatic effect of the bog. The excessively dry and hot summer 2015 allowed testing the resistance of the newly established bog vegetation. Most plants resisted well, including graminoids Eriophorum vaginatum, Trichophorum cespitosum or Carex sp., ericaceous (Vaccinium oxycoccos, myrtillus and vitis-idea) and mosses (especially Sphagnum). This living laboratory provides a unique opportunity to inform the public about the characteristics and functions of these ecosystems and the challenges of conserving and restoring them in a warmer world.
  • Publication
    Accès libre
    Comparative ecology of vascular plant, bryophyte and testate amoeba communities in four Sphagnum peatlands along an altitudinal gradient in Switzerland
    ;
    Feldmeyer-Christe, Elizabeth
    ;
    Monitoring tools are needed to assess changes in peatland biotic communities and ecosystem functions in response to on-going climate and other environmental changes. Although the responses of soil organisms and plants to ecological gradients and perturbations do not always correlate, peatland monitoring is mainly based on vegetation surveys. Testate amoebae, a group of protists, are important contributors to carbon and nitrogen cycling in organic soils and are useful bioindicators in peatland ecology and paleoecology. There is however little comparative data on the value of testate amoebae, vascular plants and bryophytes as bioindicators of micro-environmental gradients in peatlands.
    We compared the relationships of testate amoebae, bryophytes, and vascular plants with soil temperature, water table depth, micro-habitats and the carbon and nitrogen content of Sphagnum mosses in four peatlands along a 1300 m altitudinal gradient in Switzerland. We used the full diversity of vascular plants and bryophyte but only a selection of ten easily identifiable testate amoeba morpho-taxa (i.e. species or species-complexes).
    Indirect and direct gradient ordinations, multiple factor analysis (MFA) and transfer function models for inferring water table depth showed that a selection of ten testate amoeba taxa are more powerful (% variance explained in RDA) and accurate (discrimination among habitats) indicators of local conditions (micro-habitat type, water table depth and Sphagnum C/N ratio) than the vegetation (vascular plants and bryophytes either individually or combined and considering the full diversity).
    Our study showed that a limited list of ten easily identifiable testate amoeba taxa have higher bioindication value than the full bryophytes and vascular plants. Furthermore, testate amoebae can be analyzed on samples collected at any season (accessibility allowing and if precise sampling sites are well marked) – a clear advantage for biomonitoring and can be used to infer past changes from the peat record at the same taxonomic resolution. This simple approach could therefore be very useful for biomonitoring of peatlands.