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  • Publication
    Accès libre
    Functional responses of multi-taxa communities to disturbance and stress gradients in a restored floodplain
    1. Trait-based approaches can reveal the mechanisms through which disturbances or stress impact communities, allowing comparisons of the role of different mechanisms in shaping communities among taxonomic groups. Such information can lead to higher comparability, transferability and predictability of the outcome of restoration projects. However, multitaxa trait-based approaches were rarely used in the context of ecosystem restoration. 2. We investigated the responses to environmental gradients of seven taxa (vascular plants, staphylinid and carabid beetles, spiders, isopods, diplopods and earthworms) in a restored floodplain using a species traits approach. We assessed the impact of flood disturbances and soil hydric stress on the functional diversity (FD) and community-weighted mean (CWM) response of traits for each taxon. 3. Ordination of hydrological variables revealed two main gradients. The first was related to the spatiotemporal dynamics of flood disturbances and the second to the average changes in soil hydric conditions. 4. The analysis of CWM revealed that larger, poorly mobile species with narrow ecological tolerances were filtered by regular floods and/or changes in soil hydric conditions. 5. Functional diversity patterns differed between the two gradients: decreasing with increasing flood disturbance, but increasing along the soil hydric stress gradient. This suggests that the mechanisms shaping community composition differ between the two gradients with environmental filtering being dominant with increasing flood disturbances and competition decreasing with more soil hydric stress. 6. Synthesis and applications. Our study shows that the impact of restored flood disturbances and soil hydric stress on plant and invertebrate functional diversity and community- weighted mean can be positive, negative or more complex depending on the taxonomic group and environmental gradient considered. The patterns can to some extent be explained by the specific characteristics of each group. Larger, poorly mobile species with narrow ecological tolerances were particularly vulnerable to changes in disturbance and stress regime following floodplain restoration. These species may therefore be lost in the initial phases of restoration projects, but other more characteristic species of dynamic floodplains will be favoured. Understanding the consequences of these contrasted responses for biodiversity conservation and ecosystem functioning constitutes the next challenge for ecosystem restoration.
  • Publication
    Accès libre
    Heterogeneity of soil carbon pools and fluxes in a channelized and a restored floodplain section (Thur River, Switzerland)
    (2011) ;
    Shrestha, J.
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    Frossard, E.
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    Guenat, Claire
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    Niklaus, P. A.
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    Pasquale, N.
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    Tockner, K.
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    Luster, J.
    Due to their spatial complexity and dynamic nature, floodplains provide a wide range of ecosystem functions. However, because of flow regulation, many riverine floodplains have lost their characteristic heterogeneity. Restoration of floodplain habitats and the rehabilitation of key ecosystem functions, many of them linked to organic carbon (C) dynamics in riparian soils, has therefore become a major goal of environmental policy. The fundamental understanding of the factors that drive the processes involved in C cycling in heterogeneous and dynamic systems such as floodplains is however only fragmentary.

    We quantified soil organic C pools (microbial C and water extractable organic C) and fluxes (soil respiration and net methane production) in functional process zones of adjacent channelized and widened sections of the Thur River, NE Switzerland, on a seasonal basis. The objective was to assess how spatial heterogeneity and temporal variability of these pools and fluxes relate to physicochemical soil properties on one hand, and to soil environmental conditions and flood disturbance on the other hand.

    Overall, factors related to seasonality and flooding (temperature, water content, organic matter input) affected soil C dynamics more than soil properties did. Coarse-textured soils on gravel bars in the restored section were characterized by low base-levels of organic C pools due to low TOC contents. However, frequent disturbance by flood pulses led to high heterogeneity with temporarily and locally increased C pools and soil respiration. By contrast, in stable riparian forests, the finer texture of the soils and corresponding higher TOC contents and water retention capacity led to high base-levels of C pools. Spatial heterogeneity was low, but major floods and seasonal differences in temperature had additional impacts on both pools and fluxes. Soil properties and base levels of C pools in the dam foreland of the channelized section were similar to the gravel bars of the restored section. By contrast, spatial heterogeneity, seasonal effects and flood disturbance were similar to the forests, except for indications of high CH4 production that are explained by long travel times of infiltrating water favoring reducing conditions. Overall, the restored section exhibited both a larger range and a higher heterogeneity of organic C pools and fluxes as well as a higher plant biodiversity than the channelized section. This suggests that restoration has indeed led to an increase in functional diversity.
  • Publication
    Accès libre
    Community development along a proglacial chronosequence: are above-ground and below-ground community structure controlled more by biotic than abiotic factors?
    (2010)
    Carlson, Matthew L.
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    Flagstad, Lindsey A.
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    ;
    1. We studied vascular plant and soil-dwelling testate amoeba communities in deglaciated sites across a range of substrate ages in Kenai Fjords, Alaska, USA to test four hypotheses. (i) Patterns of community assembly are similar for vascular plants and testate amoebae. (ii) Vascular plant and testate amoeba communities are more strongly correlated to abiotic variables than to each other, since these communities are not directly linked trophically. (iii) Plant community structure becomes less associated with abiotic condition in succession relative to testate amoebae, as species replacement is believed to be more common for plants than testate amoebae. (iv) Above- and below-ground communities become more strongly linked over the succession, due a shift from predominantly allogenic to autogenic forces.
    2. We assessed relationships among biotic communities and abiotic site variables across the chronosequence using multiple factor analysis, redundancy analysis (RDA) and a moving-window analysis. 3. The diversity patterns and the communities’ response to site and soil variables differed between groups. The composition of both communities was significantly explained by bedrock type and moisture regime. The vascular plant community, however, was more influenced by distance from the glacier.
    4. Testate amoeba and vascular plant community patterns were significantly linked to each other and to location and physical conditions. The moving-window RDA indicates the variation explained by the physical and chemical environment tended to slightly decrease through the chronosequence for testate amoebae, while a bell-shape response was evidenced for vascular plants. The variation of the microbial community explained by the plant community was very low in the early stages of the succession and became higher than the variation explained by the environmental variables later in the chronosequence.
    5. Synthesis. These results suggest that vascular plants and testate amoebae are as linked or more in ecosystem development than either community is to changes in site condition. Furthermore, the strength of interactions varies along the succession. Thus, ecological links may be more important than macro-scale abiotic site condition is to community development, even between communities without direct trophic interactions.
  • Publication
    Accès libre
    Spatial and Seasonal Patterns of Cattle Habitat use in a Mountain Wooded Pasture
    (2006)
    Kohler, Florian
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    Reust, Stéphanie
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    Wagner, Helene H.
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    Gadallah, Fawziah
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    Buttler, Alexandre
    Management-oriented models of cattle habitat use often treat grazing pressure as a single variable summarizing all cattle activities. This paper addresses the following questions: How does the spatial pattern of cattle effects vary between cattle activities in a highly heterogeneous landscape? Do these patterns change over the grazing season as forage availability decreases? What are the respective roles of natural and management-introduced structures? We estimated the intensity of herbage removal, dung deposition and trampling after each of three grazing periods on a grid of 25 m × 25 m cells covering an entire paddock in the Swiss Jura Mountains. We found no significant positive correlations between cattle effects. Spatial patterns weakened through the season for grazing and trampling, whereas dunging patterns changed little between grazing periods. Redundancy analysis showed that different cattle effects were correlated with different environmental variables and that the importance of management-introduced variables was highest for herbage removal. Autocorrelograms and partial redundancy analyses using principal coordinates of neighbour matrices suggested that dunging patterns were more coarse-grained than the others. Systematic differences in the spatial and seasonal patterns of cattle effects may result in complex interactions with vegetation involving feedback effects through nutrient shift, with strong implications for ecosystem management. In heterogeneous environments, such as pasture-woodland landscapes, spatially explicit models of vegetation dynamics need to model cattle effects separately.
  • Publication
    Accès libre
    Effect of cattle activities on gap colonization in mountain pastures
    (2006)
    Kohler, Florian
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    ; ;
    Buttler, Alexandre
    Cattle influences gap dynamics in pastures in two ways: (1) by creating gaps and (2) by affecting the colonization process. This effect of cattle activity on gap revegetation can be subdivided in three main factors: herbage removal, trampling and dung and urine deposition. The objective of this study was to assess how these three effects moderate the plant succession following gap creation.
    In an exclosure, four controlled treatments simulating cattle activity (repeated mowing, trampling, manuring and untreated control) were applied on plots of 2 x 2 m. In the centre of each plot, one artificial gap of 60 x 60 cm was created. During three years, vegetation changes were monitored in spring and in autumn, with a square grid of 100 cells of 0.01 m2 centred on the gap.
    Our experiment confirmed that fine-scale gap creation may have a high impact on relative abundances of species in the community. The gap environment acts on species as a filter and this filtering was described in terms of regenerative attributes. Colonizers were species with small seeds, unspecialized seed dispersal, persistent seed bank and high vegetation spread. However, the role of dung deposition, herbage removal or trampling by cattle did not seem to be of primary importance in the revegetation process, but could moderate vegetation response. Therefore, the different cattle effects act as secondary filters that selectively favoured or disadvantaged different species from the gap-regenerating community. These complex interactions are probably keys to understand plant coexistence in perennial grasslands.
  • Publication
    Accès libre
    How elevated pCO2 modifies total and metabolically active bacterial communities in the rhizosphere of two perennial grasses grown under field conditions
    (2006)
    Jossi, Maryline
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    Fromin, Nathalie
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    Tarnawski, Sonia
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    Kohler, Florian
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    Hamelin, Jérôme
    The response of total (DNA-based analysis) and active (RNA-based analysis) bacterial communities to a pCO2 increase under field conditions was assessed using two perennial grasses: the nitrophilic Lolium perenne and the oligonitrophilic Molinia coerulea. PCR- and reverse transcriptase-PCR denaturing gradient gel electrophoresis analysis of 16S rRNA genes generated contrasting profiles. The pCO2 increase influenced mainly the active and root-associated component of the bacterial community. Bacterial groups responsive to the pCO2 increase were identified by sequencing of corresponding denaturing gradient gel electrophoresis bands. About 50% of retrieved sequences were affiliated to Proteobacteria. Our data suggest that Actinobacteria in soil and Myxococcales (Deltaproteobacteria) in root are stimulated under elevated pCO2.
  • Publication
    Accès libre
    Spatial and seasonal patterns of cattle habitat use in a mountain wooded pasture
    (2006)
    Kohler, Florian
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    ;
    Reust, Stéphanie
    ;
    Wagner, Helene
    ;
    Gadallah, Fawziah
    ;
    ;
    Buttler, Alexandre
    Management-oriented models of cattle habitat use often treat grazing pressure as a single variable summarizing all cattle activities. This paper addresses the following questions: How does the spatial pattern of cattle effects vary between cattle activities in a highly heterogeneous landscape? Do these patterns change over the grazing season as forage availability decreases? What are the respective roles of natural and management-introduced structures? We estimated the intensity of herbage removal, dung deposition and trampling after each of three grazing periods on a grid of 25 m x25 m cells covering an entire paddock in the Swiss Jura Mountains. We found no significant positive correlations between cattle effects. Spatial patterns weakened through the season for grazing and trampling, whereas dunging patterns changed little between grazing periods. Redundancy analysis showed that different cattle effects were correlated with different environmental variables and that the importance of management-introduced variables was highest for herbage removal. Autocorrelograms and partial redundancy analyses using principal coordinates of neighbour matrices suggested that dunging patterns were more coarse-grained than the others. Systematic differences in the spatial and seasonal patterns of cattle effects may result in complex interactions with vegetation involving feedback effects through nutrient shift, with strong implications for ecosystem management. In heterogeneous environments, such as pasture-woodland landscapes, spatially explicit models of vegetation dynamics need to model cattle effects separately.
  • Publication
    Accès libre
    Soil Microbial Community Changes in Wooded Mountain Pastures due to Simulated Effects of Cattle Grazing
    (2005)
    Kohler, Florian
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    Hamelin, Jérôme
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    ; ;
    Buttler, Alexandre
    The effect of cattle activity on pastures can be subdivided into three categories of disturbances: herbage removal, dunging and trampling. The objective of this study was to assess separately or in combination the effect of these factors on the potential activities of soil microbial communities and to compare these effects with those of soil properties and plant composition or biomass. Controlled treatments simulating the three factors were applied in a fenced area including a light gradient (sunny and shady situation): (i) repeated mowing; (ii) trampling; (iii) fertilizing with a liquid mixture of dung and urine. In the third year of the experiment, community level physiological profiles (CLPP) (Biolog Ecoplates™) were measured for each plots. Furthermore soil chemical properties (pH, total organic carbon, total nitrogen and total phosphorus), plant species composition and plant biomass were also assessed. Despite differences in plant communities and soil properties, the metabolic potential of the microbial community in the sunny and in the shady situations were similar. Effects of treatments on microbial communities were more pronounced in the sunny than in the shady situation. In both cases, repeated mowing was the first factor retained for explaining functional variations. In contrast, fertilizing was not a significant factor. The vegetation explained a high proportion of variation of the microbial community descriptors in the sunny situation, while no significant variation appeared under shady condition. The three components of cattle activities influenced differently the soil microbial communities and this depended on the light conditions within the wooded pasture. Cattle activities may also change spatially at a fine scale and short-term and induce changes in the microbial community structure. Thus, the shifting mosaic that has been described for the vegetation of pastures may also apply for below-ground microbial communities.
  • Publication
    Accès libre
    Is there a future for wild grapevine (Vitis vinifera subsp. silvestris) in the Rhine Valley?
    (2005)
    Arnold, Claire
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    Schnitzler, Annik
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    Douard, Anne
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    Peter, Richard
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    The wild grapevine, Vitis vinifera subsp. silvestris (Gmelin) Hegi, is considered to be an endangered taxon in Europe, mainly as a consequence of the introduction of pathogens from North America and of the destruction of its habitat. In the Rhine Valley, nearly all populations disappeared due to river management, the intensi.cation of forestry, and the introduction of phylloxera. After a growing awareness of the need to preserve endangered forest ecosystems, attempts to reintroduce wild grapevine in the Rhine Valley were performed, particularly in the French nature reserves Erstein and Offendorf since 1992. However, regular surveys of the plants indicate the rapid decline of the populations. In 2002, we proposed to summarise the knowledge accumulated after 10 years of experiments. Results indicate that from the initial 91 individuals planted in 1992, only 14 survived in 2002 (2 in Erstein, 12 in Offendorf). The failure of the experiment may be explained by several factors: unsuitable sites (too shady, absence of support for the young plants), absence of monitoring, vandalism or predation. According to these results and recent knowledge of the ecology of the plant and of vines in general, new transplantation experiments are proposed in which the plants will be monitored during their establishment in the forests. The success of this second transplant (50 plants per reserve) will be enhanced by restoration projects of the Rhine River dynamics, with partial re-.ooding. Floods should help to avoid, or at least to reduce, pest and disease expansion on future adult plants.
  • Publication
    Accès libre
    Seasonal vegetation changes in mountain pastures due to simulated effects of cattle grazing
    (2004)
    Kohler, Florian
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    ; ;
    Buttler, Alexandre
    Cattle influence grassland dynamics in three ways: herbage removal, dung deposition and trampling. The objective of this study was to assess the effects of these factors, separately or in combination, and to compare them with cattle grazing over a one year period in a field experiment conducted in the Jura Mountains of northwestern Switzerland. A set of controlled treatments simulating the three factors was applied in a fenced area: (1) repeated mowing – three levels; (2) intensive trampling – two levels; (3) manuring with a liquid mixture of dung and urine – three levels. All treatments were applied homogeneously to the entire surface of each of the 40 plots inside the exclosure. Additionally, ten plots outside the fenced area represented reference plots with regular cattle pasturing. The multivariate response of species composition was assessed three times with the point-intercept method: in spring before the treatments, in autumn after one season of treatments and at the beginning of the following year after winter rest. Multivariate analyses of vegetation data in the first year showed an overwhelming seasonal shift and significant differences induced by treatments. Abandoned and manured plots showed the largest deviation from the cattle grazed reference. Herbage removal, simulated by repeated mowing, appeared to be the most important factor for maintaining vegetation texture. Seasonal treatment effects were only partially carried over to the next spring, showing an unexpected resilience of the plant community, probably due to life-history traits and competition release following climatic disturbance in winter.